YRC Public Data Repository - Protein Structure Prediction

Protein:	Snap24-PA
Organism:	Drosophila melanogaster
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Snap24-PA.

Description	E-value	Query Range	Subject Range
gi\|481203 - gi\|481203\|pir\|\|S38309 SNAP-25 protein - chicken	174.0	[0..5]	[192..3]
gi\|50841439 - gi\|50841439\|gb\|AAT84082.1\| synaptosomal-associated protein [Carassius auratus]	164.0	[0..40]	[212..1]
gi\|110756927 - gi\|110756927\|ref\|XP_394588.3\| PREDICTED: similar to Synaptosomal-associated protein 25 (SNAP-25) (Sy...	158.0	[0..9]	[211..15]
gi\|39593308, gi\|... - gi\|39593308\|emb\|CAE64778.1\| Hypothetical protein CBG09569 [Caenorhabditis briggsae], gi\|187031738\|em... gi\|157763374 - gi\|157763374\|ref\|XP_001674029.1\| Hypothetical protein CBG09569 [Caenorhabditis briggsae AF16]	155.0	[0..7]	[210..32]
gi\|194102684, gi... - gi\|195145522\|ref\|XP_002013741.1\| GL23234 [Drosophila persimilis], gi\|194102684\|gb\|EDW24727.1\| GL2323... gi\|54638329, gi\|... - gi\|54638329\|gb\|EAL27731.1\| GA21816 [Drosophila pseudoobscura pseudoobscura], gi\|125774663\|ref\|XP_001... gi\|125774663\|ref... - GA21816-PA [Drosophila pseudoobscura], GA21816 [Drosophila pseudoobscura pseudoobscura]	154.0	[0..6]	[212..5]
gi\|91087735 - gi\|91087735\|ref\|XP_974721.1\| PREDICTED: similar to AGAP001394-PA [Tribolium castaneum]	152.0	[0..2]	[211..6]
gi\|109080767 - gi\|109080767\|ref\|XP_001105155.1\| PREDICTED: similar to synaptosomal-associated protein 23 isoform SN... gi\|90078839 - gi\|90078839\|dbj\|BAE89099.1\| unnamed protein product [Macaca fascicularis]	152.0	[0..14]	[212..7]
gi\|157106571, gi... - gi\|157106571\|ref\|XP_001649383.1\| synaptosomal associated protein [Aedes aegypti], gi\|108879802\|gb\|EA...	150.0	[0..8]	[212..13]
gi\|55731614 - gi\|55731614\|emb\|CAH92513.1\| hypothetical protein [Pongo abelii] gi\|55731614\|emb\|... - hypothetical protein [Pongo pygmaeus]	150.0	[0..5]	[212..3]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVENAEPR TELQELQFKS GQVADESLES TRRMLALMDE SKEAGIRTLV ALDDQGEQLD  60
   61 RIEEGMDRIN ADMREAEKNL SGMEKCCGIC VLPWKKVNIK DDGESAWKAN DDGKIVASQP 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.154902
Match:	1jthA
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [121-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRVIDERERG GMGAPPQSGY VARITNDARE DEMDENLGQV NSMLGNLRNM ALDMGSELEN  60
   61 QNKQVDRINA KGDANNIRMD GVNKRANNLL KS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.30103
Match:	1l4aD
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits