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View Structure Prediction Details

Protein: gi|28573127, gi|...
Organism: Drosophila melanogaster
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28573127, gi|....

Description E-value Query
Range
Subject
Range
gi|71846204, gi|... - gi|71906583|ref|YP_284170.1| FtsH peptidase [Dechloromonas aromatica RCB], gi|71846204|gb|AAZ45700.1...
338.0 [0..18] [389..36]

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Predicted Domain #1
Region A:
Residues: [1-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLKEEIAQ FHEQSLEKYD GLDPHDLYVL YKKLQMELEL IQFIHAQEEV KRIKAVPLVI  60
   61 GQFLEAVDEN NGIVASTTGS NYYVRVLSTI DREQLKPSSS VGLHKQSNCL VDLVPPEADS 120
  121 TISMLSPDEK PDISYSDIGG LDIQKQEIRE AVELPLTHAQ LYKQIGIDPP RGVLLFGPPG 180
  181 CGKTMLAKAV AHHTTASFIR VVGSEFVQKY LGEGPRMVRD LFRLAKQNSP SIIFIDEIDA 240
  241 IATKRFDAQT GADREVQRIL LELLNQMDGF DETTNIKVIM ATNRADTLDP ALLRPGRLDR 300
  301 KIELPLPDRR QKRLVFTTIT SKMNVGEDVD LEDIIARPDK ISNADINAIC QEAGMHAVRE 360
  361 NRYVVNAKDF EKGYKTSVRK DEAQHEFYS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.30103
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle