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View Structure Prediction Details

Protein: Pnn-PA
Organism: Drosophila melanogaster
Length: 303 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pnn-PA.

Description E-value Query
Range
Subject
Range
gi|7549210 - gi|7549210|gb|AAF63787.1|AF142406_1 200 kDa antigen p200 [Babesia bigemina]
136.0 [0..8] [303..430]

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Predicted Domain #1
Region A:
Residues: [1-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNDSGLSTV DDLEQKLNSA KQSLVILNEN IRRIAGRVPK ESLQRSEKFK YTQDGKKNEH  60
   61 NGDRPFPRNA TPGGVFKDKR RMYESKNPIS RFPIEENEGR PPRINSRVIR EMPTKKEIVE 120
  121 AQGTDSESRA RNRRMFGSLL GTLQKFCQEE SRLKSKEDKK AEIDRKVEKQ ELQERAMLRK 180
  181 QRETLFLDRK KKQFEIRRLE YKMARMKDFK VWEATMLNAK NNIRTKTKPH LFFRPKVHSP 240
  241 RTEKLLSKSK SEADVFIEFR REELEVELKN LENMNFGKME DDTAIDESFY EEPDDEEQLD 300
  301 KCK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle