| Protein: | trbd-PA |
| Organism: | Drosophila melanogaster |
| Length: | 778 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trbd-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
635.0 | [0..1] | [778..1] |
|
Region A: Residues: [1-347] |
1 11 21 31 41 51
| | | | | |
1 MCDTKDDAQK WKCETCTYEN YPSSLKCTMC QASKPLLNED IFRLSPAQES CTVAEEAAAV 60
61 EVAVMSPTPS STCYSLQPQS QARQSNVADS EKWPCKVCTY LNWPRSLRCV QCCTKRGGEA 120
121 IERGKKDMDN EADGDRAGEA LQALRISGSE ENLANKPVQL IGATASHRLS LSRGIDDATH 180
181 LNNLANASHN QSQSQHRQPV LQQQMQLQLQ PQQQRESSSS AAVPPQQQKQ CYVSKWACNS 240
241 CTYENWPRSI KCSMCGKTRE REISGSQNDL HASSSLNSQE ENQQQLQQPN VDTVSVNNSF 300
301 NKKHIYQLGS SETINNCDTL QERQERRQRQ IRRQVDWQWL NACLGVV
|
| Detection Method: |  |
| Confidence: | 8.0 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [348-701] |
1 11 21 31 41 51
| | | | | |
1 ENNYSAVEAY LSCGGNPARS LTSTEIAALN RNSAFDVGHT LIHLAIRFHR EEMLPMLLDQ 60
61 ISGSGPGIKR VPSYVAPDLA ADIRRHFANT LRLRKSGLPC HYVQKHATFA LPAEIEELPI 120
121 PIQEQLYDEL LDRDAQKQLE TPPPALNWSL EITARLSSRM FVLWNRSAGD CLLDSAMQAT 180
181 WGVFDRDNIL RRALADTLHQ CGHVFFTRWK EYEMLQASML HFTLEDSQFE EDWSTLLSLA 240
241 GQPGSSLEQL HIFALAHILR RPIIVYGVKY VKSFRGEDIG YARFEGVYLP LFWDQNFCTK 300
301 SPIALGYTRG HFSALVPMEP FTRIDGRRDD VEDVTYLPLM DCELKLLPIH FLTQ
|
| Detection Method: | |
| Confidence: | 1.1 |
| Match: | 1w7pD |
| Description: | ESCRT-II |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [702-778] |
1 11 21 31 41 51
| | | | | |
1 SEVGNEESMM RQWLDVCVTD GGLLVAQQKL SKRPLLVAQM LEEWLNHYRR IAQVITAPFI 60
61 RRPQITHYSS DGDSDEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
