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View Structure Prediction Details

Protein: eca-PA
Organism: Drosophila melanogaster
Length: 216 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eca-PA.

Description E-value Query
Range
Subject
Range
gi|109066641, gi... - gi|109066643|ref|XP_001091631.1| PREDICTED: similar to transmembrane emp24 protein transport domain ...
251.0 [0..7] [216..16]

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Predicted Domain #1
Region A:
Residues: [1-55]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDQFISLAL ILCVLHSACG LYFHISETER KCFIEEVPDE TTVIVNYKVE LYDPR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [56-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNGFMPSSPG IGMHVEVRDS DDKIVLSRVY SSQGRISFTS HTPGEHVICM FSNSTAWFSG  60
   61 AQLRVHLDIQ V

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 16.481486
Match: PF01105.15
Description: No description for PF01105.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [127-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEHAIDYAHV AQKEKLTELQ LRIRQLLDQV EQITKEQNYQ RYREERFRHT SESTNSRVLW  60
   61 WSLAQTVVLV CMGFWQMRHL KSFFEAKKLV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle