YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: bocksbeutel-PA
Organism: Drosophila melanogaster
Length: 351 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bocksbeutel-PA.

Description E-value Query
Range
Subject
Range
gi|70876557 - gi|70876557|gb|EAN89996.1| hypothetical protein, conserved [Trypanosoma cruzi]
gi|71421620 - gi|71421620|ref|XP_811847.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
148.0 [0..23] [350..157]

Back

Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLSYLDTL GNKELLAKCL EHGLPGVPVT DSTRSVIIRR LKAKITGVPL NKSKSASKKA  60
   61 IPRRETVHGS QVTTPTSEPV RRTPGKSAGR TSSNNNKISE QS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 1gjjA
Description: Thymopoietin, LAP2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [103-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRTIAYGLDN TSISGRSVQT TTTVSDMSSQ SEDDDSYMVD SPVPNYSKDQ QPRRYVSLAK  60
   61 SGVLTTSYTR EVDQPLYEQE DIPRSYTYER PHVPAATLHA LPTYEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [209-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIEPSTYRPT DLGFSRPLLT QTNLNSTSYE ESSTYNPKLS PISPRNTFSG SARPFGGPAP  60
   61 APAPIRQRQS VPVSGSNLAR GRLLQPTTAV NTLYPQLNEF YDQPNDAGEP METESESEVE 120
  121 EVPINSHFQK NRFSPLARKP LCQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle