YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9396-PA
Organism:	Drosophila melanogaster
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9396-PA.

Description	E-value	Query Range	Subject Range
gi\|125777326, gi... - gi\|54639317\|gb\|EAL28719.1\| GA14151-PA [Drosophila pseudoobscura], gi\|125777326\|ref\|XP_001359570.1\| G...	213.0	[0..5]	[141..2]
gi\|47938856, gi\|... - gi\|47938856\|gb\|AAH71315.1\| Brp44 protein [Danio rerio], gi\|169154836\|emb\|CAQ13558.1\| (novel protein,...	196.0	[0..21]	[142..5]
gi\|27882199, gi\|... - gi\|27882199\|gb\|AAH44023.1\| MGC53394 protein [Xenopus laevis], gi\|148236211\|ref\|NP_001079531.1\| hypot...	195.0	[0..17]	[145..2]
gi\|62859799, gi\|... - gi\|62859799\|ref\|NP_001016695.1\| brain protein 44 [Xenopus (Silurana) tropicalis], gi\|169642463\|gb\|AA...	195.0	[0..17]	[145..2]
gi\|109019387, gi... - gi\|109019387\|ref\|XP_001091697.1\| PREDICTED: brain protein 44 [Macaca mulatta], gi\|109018224\|ref\|XP_0...	193.0	[0..15]	[140..2]
HGNC:24515\|Ensem... - protein 44 gi\|114561170, gi... - gi\|114561172\|ref\|XP_001174840.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114... gi\|117644994 - gi\|117644994\|emb\|CAL37963.1\| hypothetical protein [synthetic construct] BRP44 - brain protein 44	192.0	[0..15]	[140..2]
MPC2_PONAB - Mitochondrial pyruvate carrier 2 OS=Pongo abelii GN=MPC2 PE=2 SV=1 BR44_PONPY - Brain protein 44 - Pongo pygmaeus (Orangutan)	188.0	[0..15]	[140..2]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATPPTTPA PTAAASAGKG LHSRAYNGLI KACDKYVPPK MRPLWMHPAG PKTIFFWAPI  60
   61 VKWSLVIAGL SDLTRPADKI SPNGCLALGA TNLIWTRYSL VIIPKNYSLF AVNLFVSLTQ 120
  121 LFQLGRYYNY QWEQSRLEKN GEQCPAIEAS L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.677781
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.899	0.789	mitochondrion	a.24.3	Cytochromes

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits