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View Structure Prediction Details

Protein: ps-PB
Organism: Drosophila melanogaster
Length: 475 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ps-PB.

Description E-value Query
Range
Subject
Range
gi|51092069 - gi|51092069|gb|AAT94448.1| RE39088p [Drosophila melanogaster]
275.0 [0..8] [475..96]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLCSSESV CSGIEVEIEN NNNNHIHHGE TTYHMKILVP AVASGAIIGK GGETIASLQK  60
   61 DTGARVKMSK SHDFYPGTTE RVCLITGSTE AIMVVMEFIM DKIREKPDLT NKIVDTDSKQ 120
  121 TQERDKQVKI LVPNSTAGMI IGKGGAFIKQ IKEESGSYVQ ISQKPTDVSL QERCITIIGD 180
  181 KENNKNACKM ILSKIVEDPQ SGTC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 2annA
Description: No description for 2annA was found.

Predicted Domain #2
Region A:
Residues: [205-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNVSYADVSG PVANFNPTGS PYATNQNAIN SSTASLNSTL GTTIGGANSA ASLLVNGTGI  60
   61 NLSINLGSPN PAPNLAVATQ LLEHIKVAMR G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [296-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGYSETVTNE VVAALSVLAK YGVLGMGVGV SHTNGAHSTL GNFLGVTTLD QQTAAAASAA  60
   61 TASNVFGAVG QVNLEQYAAA VASAAAASRP TQSQLDAAAV QFDPFRHLGS ATAPAATPVS 120
  121 LNNNSFGLTA TTGTATTAQL GGLSKSPTPG DLSSKDSKNV EVPEVIIGAI LGARPYYYPY 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle