YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8132-PA
Organism:	Drosophila melanogaster
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8132-PA.

Description	E-value	Query Range	Subject Range
gi\|60688591, gi\|... - gi\|60688591\|gb\|AAH91101.1\| Nit2-prov protein [Xenopus tropicalis], gi\|197246228\|gb\|AAI68796.1\| Nit2 ...	285.0	[0..7]	[278..2]
NIT2 - nitrilase family, member 2	284.0	[0..6]	[281..2]
gi\|47214136 - gi\|47214136\|emb\|CAG01394.1\| unnamed protein product [Tetraodon nigroviridis]	284.0	[0..5]	[278..429]
NIT2_RAT - Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1	282.0	[0..6]	[281..2]
NIT2B_XENLA - Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1	280.0	[0..7]	[278..3]
gi\|109032725 - gi\|109032725\|ref\|XP_001091514.1\| PREDICTED: similar to nitrilase family, member 2 [Macaca mulatta]	280.0	[0..7]	[281..53]
gi\|114588194 - gi\|114588194\|ref\|XP_526254.2\| PREDICTED: similar to Nitrilase family, member 2 [Pan troglodytes]	277.0	[0..8]	[281..139]
NIT2_MOUSE - Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1	277.0	[0..6]	[281..2]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTSNIMRL ALLQLKGSKD KVANVQNAVT KIEAAVKEHK PRLITLPECF NAPYGTKYFR  60
   61 EYSETIPDGY TSQQLSNLAR KHQVYIVGGT IPELGENDAI YNTCTVWSPT GDLVAKHRKM 120
  121 HLFDIDVKGG IRFKESETLS AGNDFTIINV DGHKIGIGIC YDIRFEEMAR LYRNAGCEMI 180
  181 IYPAAFNMTT GPLHWELLQR SRANDNQLFV VTTSPARDTS AEYVAYGHSM VVNPWAKVQQ 240
  241 SASEGEEIVV ADIDFSEVEQ VRQQIPVFGQ RRLDLYATER KAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.35962310800332	bayes_pls_golite062009
N-carbamoylputrescine amidase activity	0.749539597459006	bayes_pls_golite062009
hydrolase activity	0.06604196264626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: