| Protein: | pum-PA, pum-PD, ... |
| Organism: | Drosophila melanogaster |
| Length: | 1533 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pum-PA, pum-PD, ....
| Description | E-value | Query Range |
Subject Range |
|
|
627.0 | [0..1] | [1533..1] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MKFLGGNDDR NGRGGVGVGT DAIVGSRGGV SQDAADAAGA AAAAAVGYVF QQRPSPGGVG 60
61 VGVGGVGGGV PGVGAVGSTL HEAAAAEYAA HFAQKQQQTR WACGDDGHGI DNPDKWKY
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [119-1096] |
1 11 21 31 41 51
| | | | | |
1 NPPMNPANAA PGGPPGNGSN GGPGAIGTIG MGSGLGGGGG GGAGGGNNGG SGTNGGLHHQ 60
61 SMAAAAANMA AMQQAAALAK HNHMISQAAA AVAAQQQHQH PHQQHPQQQQ QQQQAQNQGH 120
121 PHHLMGGGNG LGNGNGLGIQ HPGQQQQQQQ QQQQQQHPGQ YNANLLNHAA ALGHMSSYAQ 180
181 SGGSMYDHHG GAMHPGMNGG MPKQQPLGPP GAGGPQDYVY MGGQTTVPMG AAMMPPQNQY 240
241 MNSSAVAAAN RNAAITTSTA KKLWEKSDGK GVSSSTPGGP LHPLQIPGIG DPSSVWKDHT 300
301 WSTQGENILV PPPSRAYAHG GASDTSNSGN AGILSPRDST CAKVVEYVFS GSPTNKDSSL 360
361 SGLEPHLRNL KFDDNDKSRD DKEKANSPFD TNGLKKDDQV TNSNGVVNGI DDDKGFNRTP 420
421 GSRQPSPAEE SQPRPPNLLF PPLPFNHMLM DHGQGMGGGL GGVVGSGNGV GGGSGGGGAG 480
481 GAYAAHQQMA AQMSQLQPPM MNGVGGGMPM AAQSPMLNHQ AAGPNHMESP GNLLQQQNFD 540
541 VQQLFRSQNP GLAAVATNAA AAAAAAAAAT SAASAAAAVG APPVPNGSLQ QSQQQQQQQQ 600
601 QQQQQQQMHM AAASQQFLAA QQQAQNAAYA AQQATSYVIN PGQEAAPYMG MIAAAQMPYY 660
661 GVAPWGMYPG NLIPQQGTQP RRPLTPSQQG AENQPYQVIP AFLDHTGSLL MGGPRTGTPM 720
721 RLVSPAPVLV PPGATRAGPP PPQGPQLYQP QPQTAQQNLY SQQNGSSVGG LALNTSSLTG 780
781 RRDSFDRSTS AFSPSTMDYT SSGVAAAANA VNSTVAQAAA AAAAAAAARG KWPGAMSGAA 840
841 SGAYGALGAG NASASPLGAP ITPPPSAQSC LLGSRAPGAE SRQRQQQQQQ LAAVGLPATA 900
901 AAAQAAVAAA ANNMFGSNSS IFSNPLAIPG TAAVAAAAAA AAAANSRQVA ATAAAAAAVA 960
961 AAAGGVGGAP QPGRSRLL
|
| Detection Method: | |
| Confidence: | 26.39794 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
|
Region A: Residues: [1097-1436] |
1 11 21 31 41 51
| | | | | |
1 EDFRNQRYPN LQLRDLANHI VEFSQDQHGS RFIQQKLERA TAAEKQMVFS EILAAAYSLM 60
61 TDVFGNYVIQ KFFEFGTPEQ KNTLGMQVKG HVLQLALQMY GCRVIQKALE SISPEQQQEI 120
121 VHELDGHVLK CVKDQNGNHV VQKCIECVDP VALQFIINAF KGQVYSLSTH PYGCRVIQRI 180
181 LEHCTAEQTT PILDELHEHT EQLIQDQYGN YVIQHVLEHG KQEDKSILIN SVRGKVLVLS 240
241 QHKFASNVVE KCVTHATRGE RTGLIDEVCT FNDNALHVMM KDQYANYVVQ KMIDVSEPTQ 300
301 LKKLMTKIRP HMAALRKYTY GKHINAKLEK YYMKITNPIT
|
| Detection Method: | |
| Confidence: | 170.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
|
Region A: Residues: [1437-1533] |
1 11 21 31 41 51
| | | | | |
1 VGTGAGGVPA ASSAAAVSSG ATSASVTACT SGSSTTTTST TNSLASPTIC SVQENGSAMV 60
61 VEPSSPDASE SSSSVVSGAV NSSLGPIGPP TNGNVVL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
