YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9836-PA
Organism:	Drosophila melanogaster
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9836-PA.

Description	E-value	Query Range	Subject Range
gi\|125777151, gi... - gi\|54639256\|gb\|EAL28658.1\| GA22065 [Drosophila pseudoobscura pseudoobscura], gi\|125777151\|ref\|XP_001... gi\|195152936, gi... - gi\|195152936\|ref\|XP_002017392.1\| GL22284 [Drosophila persimilis], gi\|194112449\|gb\|EDW34492.1\| GL2228... gi\|125777151\|ref... - GA22065-PA [Drosophila pseudoobscura], GA22065 [Drosophila pseudoobscura pseudoobscura]	222.0	[0..1]	[154..1]
gi\|58387816, gi\|... - gi\|58387816\|ref\|XP_315834.2\| AGAP005813-PA [Anopheles gambiae str. PEST], gi\|55238630\|gb\|EAA10764.2\|... AGAP005813-PA - FeS cluster assembly scaffold IscU\|protein_coding\|2L:21632740:21633195:1\|gene:AGAP005813	213.0	[0..1]	[150..1]
gi\|76573610 - gi\|76573610\|dbj\|BAE44694.1\| hypothetical protein [Candida albicans] gi\|68469194, gi\|... - gi\|77022706\|ref\|XP_888797.1\| hypothetical protein CaO19_6548 [Candida albicans SC5314], gi\|68470219\|...	209.0	[0..3]	[149..13]
gi\|34979811 - gi\|34979811\|gb\|AAQ83894.1\| NifU-like protein [Branchiostoma belcheri tsingtauense]	206.0	[0..1]	[154..1]
gi\|91087363 - gi\|91087363\|ref\|XP_975631.1\| PREDICTED: similar to CG9836 CG9836-PA [Tribolium castaneum]	205.0	[0..2]	[153..1]
ISU3_ARATH - Iron-sulfur cluster assembly protein 3 OS=Arabidopsis thaliana GN=ISU3 PE=2 SV=1	205.0	[0..3]	[150..1]
gi\|157104331, gi... - gi\|157104331\|ref\|XP_001648357.1\| nitrogen fixation protein nifu [Aedes aegypti], gi\|108880341\|gb\|EAT...	204.0	[0..14]	[150..13]
CE16643 - status:Confirmed UniProt:O45948 protein_id:CAA16379.1	204.0	[0..1]	[152..1]
gi\|47226486 - gi\|47226486\|emb\|CAG08502.1\| unnamed protein product [Tetraodon nigroviridis]	203.0	[0..4]	[151..8]
gi\|1075072 - gi\|1075072\|pir\|\|C64064 iron-sulfur cofactor synthesis protein nifU homolog HI0377 [similarity] - Hae...	202.0	[0..7]	[149..8]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVRNSSRL LRSQLKRVQS VPVALYHENV VEHYENPRNV GSLDKKDVTV GTGLVGAPAC  60
   61 GDVMKLQIKV DENGKIVDAK FKTFGCGSAI ASSSLATEWV KGKSIDEAGK LKNTDIAKEL 120
  121 RLPPVKLHCS MLAEDAIKAA LADYKVKQQK KVAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1q48A
Description:	Solution NMR Structure of The Haemophilus Influenzae Iron-Sulfur Cluster Assembly Protein U (IscU) with Zinc Bound at the Active Site. Northeast Structural Genomics Consortium Target IR24. This protein is not apo, it is a model without zinc binding constr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.626732820625785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: