YRC Public Data Repository - Protein Structure Prediction

Protein:	Ctr1B-PA
Organism:	Drosophila melanogaster
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ctr1B-PA.

Description	E-value	Query Range	Subject Range
gi\|45387849, gi\|... - gi\|45501115\|gb\|AAH67161.1\| Solute carrier family 31 (copper transporters), member 1 [Danio rerio], g...	161.0	[0..2]	[164..22]
gi\|54638588, gi\|... - gi\|54638588\|gb\|EAL27990.1\| GA20368-PA [Drosophila pseudoobscura], gi\|125775191\|ref\|XP_001358847.1\| G...	158.0	[0..2]	[174..1]
gi\|28201980, gi\|... - gi\|28201980\|ref\|NP_780299.1\| solute carrier family 31, member 1 [Mus musculus], gi\|26338440\|dbj\|BAC3...	157.0	[0..5]	[164..37]
gi\|85112000 - gi\|85112000\|ref\|XP_964207.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32420547, gi\|... - gi\|32420547\|ref\|XP_330717.1\| predicted protein [Neurospora crassa], gi\|28925979\|gb\|EAA34971.1\| predi...	156.0	[0..1]	[172..20]
Ctr1C-PB - The gene Copper transporter 1C is referred to in FlyBase by the symbol Dmel\Ctr1C (CG15551, FBgn0062...	155.0	[0..1]	[169..39]
gi\|57094253 - gi\|57094253\|ref\|XP_538800.1\| PREDICTED: similar to High-affinity copper uptake protein 1 (hCTR1) (Co...	155.0	[0..5]	[164..85]
gi\|47575788, gi\|... - gi\|89273850\|emb\|CAJ83621.1\| solute carrier family 31 (copper transporters), member 1 [Xenopus tropic...	155.0	[0..3]	[164..17]
gi\|109110536 - gi\|109110536\|ref\|XP_001103110.1\| PREDICTED: solute carrier family 31 (copper transporters), member 1...	153.0	[0..5]	[164..31]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHGSDDSTS TAKSCPMIMV FHAGHCERIL WRGWVASTVT EFVLSALAIF LVSFLYEALK  60
   61 FLRQQLARRE ARRASEQLAA EQRRKNEAPA AGGCCSEAPL AEPREQTYWQ RLFASSHIVQ 120
  121 SLLNLLQIVI SYLLMLIFMT FNYWLCLAVI LGLGLGYFFF GWNKKNPDES ECCP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.886057
Match:	PF04145.6
Description:	No description for PF04145.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits