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View Structure Prediction Details

Protein: gi|7299002, gi|2...
Organism: Drosophila melanogaster
Length: 520 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7299002, gi|2....

Description E-value Query
Range
Subject
Range
gi|113194755, gi... - gi|116007974|ref|NP_001036686.1| CG7549, isoform C [Drosophila melanogaster], gi|113194755|gb|ABI311...
311.0 [0..20] [520..63]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDNFKTLRR FLFEDFTLES FSLGDELGFP ESLGNTESDR RRAISYKNGA PPDLVGVLPS  60
   61 TQQQVNPPVQ HPLPEKRISS RSTGAAPYNL QQVQQQQQLQ LQQQKLQQQQ LQQQLKLKQL 120
  121 LLLQQQQQQQ QQLMTEARPL PLGVPAFRPI P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [152-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKQLAATQPS APSSTPAERR VAVDTPEPRV SVNNKLVSSI DQPHSNRTFH VANPVVSQPV  60
   61 AVPVFQAMPQ SIARIANVGK EH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [234-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTVSSHPNYL QFEEPKFDLK DVTVEELAAA ANVTVDTIKH AIYVREQQLK AEHRAQLAAK  60
   61 LREEFMRTST VRTTTTTTTT TTTTPRPQKS LAEHKVSKVM NAPKEYYPVG YDKNFDDNFK 120
  121 SKVDL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [359-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTSFSCAKQ KHFPGLYADT DLGCMVFHVC ALTDDGMVRK SFLCPENTLF DQTILKCNWW  60
   61 FYVDCSSSTS VYDSNIPISK 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.41
Match: 1dqcA
Description: Tachycitin
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [439-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYQLMKSLTY FSKYAGGQRH EQGGDKDENA LDIDSLRESM EGVARRQEQA KKAELRVEEQ  60
   61 RSMPKEDHEH VVPAEAEQQL SN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle