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View Structure Prediction Details

Protein: FBpp0308770, CG2...
Organism: Drosophila melanogaster
Length: 915 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0308770, CG2....

Description E-value Query
Range
Subject
Range
gi|125777997, gi... - gi|54639549|gb|EAL28951.1| GA15535-PA [Drosophila pseudoobscura], gi|125777997|ref|XP_001359799.1| G...
894.0 [0..6] [915..1]

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Predicted Domain #1
Region A:
Residues: [1-543]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEKWLLPAL SLALLLGTCS ALYEDQIKKF DWRGVNVGAL KQSRVDLNHF QPRILVTTYE  60
   61 GVVASLCVKT GELVWRQVLE QKPRGDVKLL QVSGFADDSS DTAAAPMGSN MGFDMLTVQG 120
  121 HAPALVRGWN TNMGALEWEW SIMPMNTERA QDAMWIYSKS VLYHVLPAWR SHLEVTAYFA 180
  181 SSGHSTGSTS KVIAPWITSE SCTLSGTFYV CTDGKQLISL DLVSKSGQVI RTSLEAEPKG 240
  241 KTQALTGLNG VVIVDGKPIS VNKDQSICGD LRSSSFAVGS FNYRKVLAYA DLSSGILRIN 300
  301 ALYLDNCAPA AELEQSLPFP EHFGTPSLSN FDCKQKRNGE GKNCLFLFSS TSESIVAVQH 360
  361 GRVRWSREES LANVIDSQFV DLPLADTEGT LENEMKGKAG DFTSFERDIA SAFLRRITTQ 420
  421 AVQIRSLFLH VIGLGPPPTD TQRAGLVRDS FGLHKMLVLL TRAGKIFGID NVSGKHHWQL 480
  481 HLPNVIGFAN DEQMRLIVQR SAKHFPLQPL CTILGKNAVS GNGVLYRFNP ITGKVAEGGL 540
  541 VQL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.30103
Match: 1yiqA
Description: Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase ADHIIG from Pseudomonas putida HK5. Compariison to the other quinohemoprotein alcohol dehydrogenase ADHIIB found in the same microorganism.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [544-768]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYRIKQLSLL GETEKDFLKG ILLLDASNKV HVYPEHAAPL ADGMYLYTAD LKTAELAGYF  60
   61 VKYAGGQLSS THIWNARLGG HNSEQQIIGV AGKNPIEHVH SQGRVLGDRS VLYKYINPNL 120
  121 VAFVTQAPDS THKSVLNLYL VDVVSGSVVF TMTHRKVRAP LSIVHSENWL AYSYFNEKLR 180
  181 RTEITTIELY EGKSQANSSV WSSLQAPPMP LVERQSYILP TIVEA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [769-915]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRETITERGI TNKHVLIGTA SGSIVEMPWH LLDPRRPIAS TTQGREEGAI PYIPELPLPT  60
   61 ESHINYNQTV ARLRNIYTAP SGLESTCLVV ATGLDLFVTR VAPSKTFDLL KEDFDYILIS 120
  121 IVLVALTSGS LIVKHLASRK LLKQAWK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle