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View Structure Prediction Details

Protein: pyd3-PA
Organism: Drosophila melanogaster
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pyd3-PA.

Description E-value Query
Range
Subject
Range
gi|73995843 - gi|73995843|ref|XP_543524.2| PREDICTED: similar to Beta-ureidopropionase (Beta-alanine synthase) (N-...
346.0 [0..1] [385..1]

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Predicted Domain #1
Region A:
Residues: [1-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFELKNLN DCLEKHLPPD ELKEVKRILY GVEEDQTLEL PTSAKDIAEQ NGFDIKGYRF  60
   61 TAREEQTRKR RIVRVGAIQN SIVIPTTAPI EKQREAIWNK VKTMIKAAAE AGCNIVCTQE 120
  121 AWTMPFAFCT REKFPWCEFA EEAENGPTTK MLAELAKAYN MVIIHSILER DMEHGETIWN 180
  181 TAVVISNSGR YLGKHRKNHI PRVGDFNEST YYMEGNTGHP VFETEFGKLA VNICYGRHHP 240
  241 QNWMMFGLNG AEIVFNPSAT IGRLSEPLWS IEARNAAIAN SYFTVPINRV GTEQFPNEYT 300
  301 SGDGNKAHKE FGPFYGSSYV AAPDGSRTPS LSRDKDGLLV VELDLNLCRQ VKDFWGFRMT 360
  361 QRVPLYAESF KKASEHGFKP QIIKET

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.522879
Match: 1f89A
Description: hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
beta-ureidopropionase activity 2.85740685481813 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 2.08563993959019 bayes_pls_golite062009
hydrolase activity 1.99914043564785 bayes_pls_golite062009
catalytic activity 1.64442398754697 bayes_pls_golite062009
N-carbamoylputrescine amidase activity 0.749539597459006 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle