YRC Public Data Repository - Protein Structure Prediction

Protein:	Pbprp4-PA
Organism:	Drosophila melanogaster
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pbprp4-PA.

Description	E-value	Query Range	Subject Range
gi\|54639505\|gb\|E... - GA11179-PA [Drosophila pseudoobscura], GA11179 [Drosophila pseudoobscura pseudoobscura] gi\|54639505, gi\|... - gi\|54639505\|gb\|EAL28907.1\| GA11179 [Drosophila pseudoobscura pseudoobscura], gi\|125777869\|ref\|XP_001...	150.0	[0..1]	[175..1]
gi\|58396184, gi\|... - gi\|58396184\|ref\|XP_321724.2\| ENSANGP00000017561 [Anopheles gambiae str. PEST], gi\|55233939\|gb\|EAA010...	131.0	[0..48]	[167..129]
gi\|37778927, gi\|... - gi\|37778927\|gb\|AAO74643.1\| odorant-binding protein 1 [Aedes aegypti], gi\|157123243\|ref\|XP_001660077....	123.0	[0..50]	[166..22]
gi\|27414033 - gi\|27414033\|gb\|AAO12083.1\| odorant-binding protein AgamOBP17 [Anopheles gambiae]	122.0	[0..50]	[166..23]
gi\|167865986, gi... - gi\|19224143\|gb\|AAL86413.1\|AF468212_1 odorant-binding protein precursor [Culex pipiens quinquefasciat...	121.0	[0..50]	[166..28]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSALVRACA VIAFLILSPN CARALQDHAK DNGDIFIINY DSFDGDVDDI STTTSAPREA  60
   61 DYVDFDEVNR NCNASFITSM TNVLQFNNTG DLPDDKDKVT SMCYFHCFFE KSGLMTDYKL 120
  121 NTDLVRKYVW PATGDSVEAC EAEGKDETNA CMRGYAIVKC VFTRALTDAR NKPTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits