YRC Public Data Repository - Protein Structure Prediction

Protein:	Aly-PA
Organism:	Drosophila melanogaster
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Aly-PA.

Description	E-value	Query Range	Subject Range
gi\|73976787 - gi\|73976787\|ref\|XP_857499.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 2 ...	156.0	[0..10]	[264..204]
gi\|76689285 - gi\|76689285\|ref\|XP_881509.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 2 ...	156.0	[0..10]	[264..204]
gi\|50416510 - gi\|50416510\|gb\|AAH77169.1\| Unknown (protein for MGC:78766) [Xenopus laevis]	153.0	[0..8]	[251..118]
gi\|1082703, gi\|6... - gi\|693937\|emb\|CAA88401.1\| polyadenylate binding protein II [Homo sapiens], pir\|\|S52491 polyadenylate...	152.0	[0..10]	[264..179]
gi\|45361397, gi\|... - gi\|45361397\|ref\|NP_989276.1\| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus (Siluran...	152.0	[0..8]	[252..118]
gi\|109120206 - gi\|109120206\|ref\|XP_001090892.1\| PREDICTED: poly(A) binding protein, cytoplasmic 1 isoform 1 [Macaca...	152.0	[0..10]	[264..204]
gi\|7489196, gi\|2... - pir\|\|T01932 RNA binding protein homolog - common tobacco (fragment), gi\|2708532\|gb\|AAB92518.1\| puta...	151.0	[0..9]	[249..243]
gi\|114649028 - gi\|114649028\|ref\|XP_001154245.1\| PREDICTED: similar to polyadenylate binding protein II isoform 1 [P...	151.0	[0..10]	[264..204]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDKIEMSLD DIIKSTRSQK KPQAARGGPG GARKTGGQQR FAGGARRGGA NAGGSPRKPG  60
   61 SVLKGPRGGV AAGAVQKAKF PRGDVNSAWK HDMYDGPKRG AVGGGSGPTR LIVGNLDYGV 120
  121 SNTDIKELFN DFGPIKKAAV HYDRSGRSLG TADVIFERRA DALKAIKQYH GVPLDGRPMT 180
  181 IQLAVSDVAV L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2f3jA
Description:	No description for 2f3jA was found.

Predicted Domain #2

Region A:
Residues: [192-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRPVAATDVK RRVGGTAPTS FKRGGGQAGG TARRGFKRPV GGKPAAGGQR RERKAPPTAE  60
   61 ELDAELDSYI NDMKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits