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View Structure Prediction Details

Protein: Ccp84Aa-PA
Organism: Drosophila melanogaster
Length: 205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ccp84Aa-PA.

Description E-value Query
Range
Subject
Range
gi|54657094 - gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu...
gi|67597591 - gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...
131.0 [0..16] [202..1679]
gi|46228363 - gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ...
gi|66359288 - gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...
130.0 [0..16] [202..1686]
gi|58378630, gi|... - gi|58378630|ref|XP_308909.2| cuticular protein 55, RR-2 family (AGAP006837-PA) [Anopheles gambiae st...
AGAP006837-PA - CPR55: cuticular protein RR-1 family (CPR55)|protein_coding|2L:39151550:39152078:1|gene:AGAP006837
127.0 [0..3] [144..2]
gi|157128000, gi... - gi|157128000|ref|XP_001661267.1| hypothetical protein AaeL_AAEL010984 [Aedes aegypti], gi|108872749|...
118.0 [0..53] [119..76]
gi|66564779 - gi|66564779|ref|XP_624729.1| PREDICTED: similar to CG1259-PB [Apis mellifera]
118.0 [0..1] [179..168]
gi|112983758, gi... - gi|12862591|dbj|BAB32481.1| cuticle protein [Bombyx mori], gi|112983758|ref|NP_001036866.1| cuticle ...
117.0 [0..1] [149..1]
gi|24660811, gi|... - gi|24660811|ref|NP_648208.1| CG7072-PA [Drosophila melanogaster], gi|23093945|gb|AAF50443.2| CG7072-...
117.0 [0..2] [120..40]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKFVFALA FVAVASAGYA PIAAPQVYHA APAVATYAHA PVAVAQKVVV KAAEEYDPHP  60
   61 QYRFSYGVDD KLTGDNKGQV EERDGDVVRG EYSLIDADGY KRIVQYTADP INGFNAVVNR 120
  121 EPLVKAVAVA 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.468521
Match: PF00379.14
Description: No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.833 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain

Predicted Domain #2
Region A:
Residues: [131-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVVKTVAAPV AQYAAPAVAH YAAPAVVKTV APVAHYAAPA VVKTVAPVAH YAAPAAYATY  60
   61 AAPTHYAAPA VAYHP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle