YRC Public Data Repository - Protein Structure Prediction

Protein:	Ccp84Ag-PA
Organism:	Drosophila melanogaster
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ccp84Ag-PA.

Description	E-value	Query Range	Subject Range
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	121.0	[0..72]	[189..1682]
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	121.0	[0..72]	[189..1689]
gi\|125808726, gi... - gi\|54636022\|gb\|EAL25425.1\| GA15602-PA [Drosophila pseudoobscura], gi\|125808726\|ref\|XP_001360850.1\| G...	112.0	[0..4]	[125..59]
gi\|108881215, gi... - gi\|157135292\|ref\|XP_001656586.1\| pupal cuticle protein 78E, putative [Aedes aegypti], gi\|108881215\|g...	110.0	[0..3]	[124..1]
gi\|21464360 - gi\|21464360\|gb\|AAM51983.1\| RE04513p [Drosophila melanogaster]	108.0	[0..1]	[191..16]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	106.0	[0..71]	[190..1519]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	102.0	[0..88]	[189..1410]
gi\|58388104, gi\|... - gi\|58388104\|ref\|XP_316041.2\| ENSANGP00000010802 [Anopheles gambiae str. PEST], gi\|55238807\|gb\|EAA117...	102.0	[0..1]	[102..32]
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	101.0	[0..26]	[120..78]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKFTILFA ACIAVASAGI IPAAAPLAAV AQVEEYDPHP QYTYGYDVKD AISGDSKTQV  60
   61 ETREGDVVQG QYSLNDADGY RRIVDYTADP INGFNAVVRR EPLVAAVAAA PAAVVAAPAP 120
  121 VVR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.657577
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAVAAPVVRA APLTTTYAAA PAPLAYAAAP APLAYAAPAP VVKAAPLVAA GPAIVKTQFA  60
   61 SPLISYAY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits