YRC Public Data Repository - Protein Structure Prediction

Protein:	Gasp-PA
Organism:	Drosophila melanogaster
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gasp-PA.

Description	E-value	Query Range	Subject Range
gi\|108869744, gi... - gi\|157137284\|ref\|XP_001663971.1\| hypothetical protein AaeL_AAEL013766 [Aedes aegypti], gi\|108869744\|...	175.0	[0..1]	[258..1]
gi\|110755489, gi... - ref\|XP_397215.1\| similar to CG10287-PA [Apis mellifera], gi\|110755489\|ref\|XP_001121720.1\| PREDICTED:...	166.0	[0..1]	[252..1]
gi\|55240327, gi\|... - gi\|58385775\|ref\|XP_314200.2\| ENSANGP00000014496 [Anopheles gambiae str. PEST], gi\|55240327\|gb\|EAA096...	162.0	[0..14]	[258..1]
gi\|119387888, gi... - gi\|91077662\|ref\|XP_974412.1\| PREDICTED: similar to CG10287-PA [Tribolium castaneum], gi\|121583754\|re...	160.0	[0..5]	[256..7]
gi\|54638675, gi\|... - gi\|54638675\|gb\|EAL28077.1\| GA10221-PA [Drosophila pseudoobscura], gi\|125775405\|ref\|XP_001358934.1\| G...	159.0	[0..15]	[247..1]
FBpp0303592, FBp... - The gene Chitinase 3 is referred to in FlyBase by the symbol Dmel\Cht3 (CG18140, FBgn0250907). It is...	158.0	[0..6]	[253..677]
gi\|95103030, gi\|... - gi\|95103030\|gb\|ABF51456.1\| gasp precursor [Bombyx mori], gi\|114052326\|ref\|NP_001040470.1\| gasp precu...	153.0	[0..18]	[238..19]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFLVVFVA LFGAAVAQSS FKCPDDFGFY PHDTSCDKYW KCDNGVSELK TCGNGLAFDA  60
   61 TDSKYLTENC DYLHNVDCGD RTELEPPITT PHCSRLYGIF PDENKCDVFW NCWNGEPSRY 120
  121 QCSPGLAYDR DARVCMWADQ VPECKNEEVA NGFSCPAAGE LANAGSFSRH AHPEDCRKYY 180
  181 ICLEGVAREY GCPIGTVFKI GDSDGTGNCE DPEDVPGCED YYGDLDLKSI RKSELLAGLN 240
  241 SEGRTKGAPK TKAASSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1n7dA
Description:	Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits