YRC Public Data Repository - Protein Structure Prediction

Protein:	Os-E-PA
Organism:	Drosophila melanogaster
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Os-E-PA.

Description	E-value	Query Range	Subject Range
gi\|2494874, gi\|4... - gi\|408473\|gb\|AAA21356.1\| OS-E, sp\|Q23970\|PBP6_DROME Pheromone-binding protein-related protein 6 prec...	145.0	[0..1]	[141..1]
gi\|39840702 - gi\|39840702\|emb\|CAD91562.1\| Olfactory Specific E protein [Drosophila mauritiana] gi\|194133526, gi... - gi\|195343853\|ref\|XP_002038505.1\| GM10579 [Drosophila sechellia], gi\|194133526\|gb\|EDW55042.1\| GM10579... gi\|145651308, gi... - gi\|32135154\|emb\|CAD98999.1\| olfactory specific E protein [Drosophila simulans], gi\|195568615\|ref\|XP_...	141.0	[0..1]	[141..1]
gi\|54638680, gi\|... - gi\|54638680\|gb\|EAL28082.1\| GA10996 [Drosophila pseudoobscura pseudoobscura], gi\|125775424\|ref\|XP_001... gi\|54638680\|gb\|E... - GA10996-PA [Drosophila pseudoobscura], GA10996 [Drosophila pseudoobscura pseudoobscura]	137.0	[0..1]	[141..1]
gi\|39840705 - gi\|39840705\|emb\|CAE00443.1\| Olfactory Specific E [Drosophila erecta]	137.0	[0..1]	[141..1]
gi\|37778927, gi\|... - gi\|37778927\|gb\|AAO74643.1\| odorant-binding protein 1 [Aedes aegypti], gi\|157123243\|ref\|XP_001660077....	135.0	[0..2]	[141..1]
gi\|167865986, gi... - gi\|19224143\|gb\|AAL86413.1\|AF468212_1 odorant-binding protein precursor [Culex pipiens quinquefasciat...	133.0	[0..3]	[141..7]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKYPLILLL IGCAAAQEPR RDGEWPPPAI LKLGKHFHDI CAPKTGVTDE AIKEFSDGQI  60
   61 HEDEALKCYM NCLFHEFEVV DDNGDVHMEK VLNAIPGEKL RNIMMEASKG CIHPEGDTLC 120
  121 HKAWWFHQCW KKADPVHYFL V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits