YRC Public Data Repository - Protein Structure Prediction

Protein:	jagn-PB, jagn-PA
Organism:	Drosophila melanogaster
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for jagn-PB, jagn-PA.

Description	E-value	Query Range	Subject Range
gi\|31207965, gi\|... - gi\|31207965\|ref\|XP_312949.1\| AGAP003240-PA [Anopheles gambiae str. PEST], gi\|31197585\|ref\|XP_307740.... AGAP003240-PA - Protein jagunal\|protein_coding\|2R:34374231:34376001:1\|gene:AGAP003240	278.0	[0..1]	[197..1]
JAGN_DROPS - Protein jagunal OS=Drosophila pseudoobscura pseudoobscura GN=jagn PE=3 SV=1 gi\|121990664, gi... - gi\|54638795\|gb\|EAL28197.1\| GA10683 [Drosophila pseudoobscura pseudoobscura], gi\|125775753\|ref\|XP_001... gi\|195146348, gi... - gi\|195146348\|ref\|XP_002014148.1\| GL24521 [Drosophila persimilis], gi\|194103091\|gb\|EDW25134.1\| GL2452...	276.0	[0..1]	[197..1]
gi\|53734319 - gb\|AAH83980.1\| Unknown (protein for MGC:98056) [Xenopus laevis] JAGN1_MOUSE - Protein jagunal homolog 1 OS=Mus musculus GN=Jagn1 PE=1 SV=2 JAGN1_RAT - Protein jagunal homolog 1 OS=Rattus norvegicus GN=Jagn1 PE=2 SV=1	258.0	[0..1]	[195..1]
gi\|57101048 - gi\|57101048\|ref\|XP_541776.1\| PREDICTED: similar to jagunal homolog 1 [Canis familiaris]	257.0	[0..1]	[195..1]
JAGN1_BOVIN - Protein jagunal homolog 1 OS=Bos taurus GN=JAGN1 PE=2 SV=1	257.0	[0..1]	[195..1]
JAGN1 - jagunal homolog 1 (Drosophila) gi\|123982932, gi... - gi\|123997611\|gb\|ABM86407.1\| jagunal homolog 1 (Drosophila) [synthetic construct], gi\|123982932\|gb\|AB...	257.0	[0..1]	[195..1]
CCDS2588.1_1 - null gi\|114585396 - gi\|114585396\|ref\|XP_516267.2\| PREDICTED: jagunal homolog 1 [Pan troglodytes] gi\|109034681 - gi\|109034681\|ref\|XP_001093581.1\| PREDICTED: similar to jagunal homolog 1 [Macaca mulatta]	257.0	[0..1]	[195..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRGGPMVA GTDGNDFEFR QRVAGTYQIS LLNKSRLKYC IFFHALLFFV MLAKLTSDIL  60
   61 DHLDIFVLEI EELEVPPPLW WEYVWAASLL TSFLGLSAAR GNKVREMQKY MVAILLFAIL 120
  121 PLFYCFAYYF SDVWEFATLD KSVELDETDI FVWRGYPYGV FWYAFCFVGF QVHGFTLYFA 180
  181 YNLVKAWKAR TATRKFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.853872
Match:	PF07086.3
Description:	No description for PF07086.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits