YRC Public Data Repository - Protein Structure Prediction

Protein:	RpL13A-PB
Organism:	Drosophila melanogaster
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL13A-PB.

Description	E-value	Query Range	Subject Range
gi\|115389400, gi... - gi\|115389400\|ref\|XP_001212205.1\| serine palmitoyltransferase 2 [Aspergillus terreus NIH2624], gi\|114...	278.0	[0..4]	[203..694]
RL13A_BOVIN - 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3	278.0	[0..5]	[205..3]
gi\|190689373, gi... - gi\|190690735\|gb\|ACE87142.1\| ribosomal protein L13a protein [synthetic construct], gi\|190689373\|gb\|AC... RPL13A - ribosomal protein L13a gi\|114678455, gi... - gi\|55628330\|ref\|XP_527683.1\| PREDICTED: similar to ribosomal protein L13a; 60S ribosomal protein L13...	277.0	[0..1]	[205..1]
RL13A_MACFA - 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3	276.0	[0..1]	[205..1]
gi\|77404207, gi\|... - gi\|77404207\|ref\|NP_775462.2\| ribosomal protein L13A [Rattus norvegicus], gi\|55778547\|gb\|AAH86382.1\| ...	276.0	[0..5]	[205..3]
gi\|55644083, gi\|... - gi\|55644083\|ref\|XP_511050.1\| PREDICTED: similar to 23 kD highly basic protein isoform 5 [Pan troglod...	276.0	[0..1]	[205..1]
gi\|134025441, gi... - gi\|89272927\|emb\|CAJ83235.1\| ribosomal protein L13a [Xenopus tropicalis], gi\|62858175\|ref\|NP_00101648...	275.0	[0..5]	[205..31]
RL13A_PONPY - 60S ribosomal protein L13a - Pongo pygmaeus (Orangutan) RL13A_PONAB - 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3	275.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLTNRTVV IDGRGHLLGR LASVVAKYLL QGGKVAVVRC EELNLSGHFY RNKIKFLAYL  60
   61 RKRCNVNPAR GPFHFRAPSR IFYKAVRGMI PHKTKRGQAA LARLRVFDGI PSPYDKRRRV 120
  121 VVPIAMRVLT LRSDRKYCQV GRLSHEVGWH YQDVIKSLER KRKAKLRVTL KHNRELKKLT 180
  181 VKARENIAKA AEPFNKIIKS YGYEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1s1iM
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits