YRC Public Data Repository - Protein Structure Prediction

Protein:	Tim17a2-PA
Organism:	Drosophila melanogaster
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tim17a2-PA.

Description	E-value	Query Range	Subject Range
FBpp0310761, Tim... - The gene Tim17a1 is referred to in FlyBase by the symbol Dmel\Tim17a1 (CG10090, FBgn0038018). It is ...	250.0	[0..1]	[223..1]
gi\|57111755 - gi\|57111755\|ref\|XP_538028.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	218.0	[0..2]	[166..3]
gi\|109130740 - gi\|109130740\|ref\|XP_001104863.1\| PREDICTED: similar to Mitochondrial import inner membrane transloca...	215.0	[0..2]	[166..53]
TIMM17B - translocase of inner mitochondrial membrane 17 homolog B (yeast) gi\|55662945 - gi\|55662945\|ref\|XP_521050.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	215.0	[0..2]	[166..3]
TI17B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=1 SV=1	213.0	[0..2]	[166..3]
gi\|34933423, gi\|... - gi\|34933423\|ref\|XP_228758.2\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	213.0	[0..2]	[166..3]
gi\|76659462 - gi\|76659462\|ref\|XP_873411.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	211.0	[0..2]	[166..3]
AGAP004657-PA, A... - Mitochondrial inner membrane translocase subunit (TIM17)\|protein_coding\|2R:59570835:59571446:1\|gene:... gi\|116126226, gi... - gi\|118788469\|ref\|XP_316737.3\| AGAP004657-PA [Anopheles gambiae str. PEST], gi\|116126226\|gb\|EAA11986....	203.0	[0..2]	[163..3]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYNRQPCPI RIVEDCGCAF MMGTMGGSLF QYLKGFRNAP SGLRRGLHGG IESVRLRTPA  60
   61 IAGSFAIWGA TFSTVDCVMV SYRQREDSWN AIVSGAATGG ILAARNGIRA MANSAFVGCL 120
  121 VLAMLEGAGA AVATIYASDG G

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.21467
Match:	PF02466.10
Description:	No description for PF02466.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.890	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.846	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.815	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.783	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.772	N/A	N/A	d.79.5	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF

Predicted Domain #2

Region A:
Residues: [142-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKAEESLITV DQQMQRPQWE TSVADSNLTG AELERVLDEC RAYRAHNKMQ QPMRSDAVEG  60
   61 KELGQLMKPM HSLVDLVKLA EIV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.766	a.2.3	Chaperone J-domain
View	Download	0.578	a.2.3	Chaperone J-domain
View	Download	0.577	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.575	a.47.2	t-snare proteins
View	Download	0.565	f.17.1	F1F0 ATP synthase subunit C

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits