YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9769-PA
Organism:	Drosophila melanogaster
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9769-PA.

Description	E-value	Query Range	Subject Range
gi\|114636591 - gi\|114636591\|ref\|XP_508270.2\| PREDICTED: hypothetical protein LOC451007 [Pan troglodytes]	298.0	[0..8]	[277..111]
gi\|62641108, gi\|... - gi\|62641108\|ref\|XP_215037.3\| PREDICTED: similar to eukaryotic translation initiation factor 3, subun...	291.0	[0..8]	[277..96]
gi\|21754858 - gi\|21754858\|dbj\|BAC04577.1\| unnamed protein product [Homo sapiens]	291.0	[0..8]	[277..85]
gi\|61369601, gi\|... - gi\|61369601\|gb\|AAX43358.1\| eukaryotic translation initiation factor 3 subunit 5 epsilon [synthetic c...	290.0	[0..8]	[277..92]
gi\|109107398 - gi\|109107398\|ref\|XP_001105893.1\| PREDICTED: similar to eukaryotic translation initiation factor 3, s... EIF3F_MACFA - Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1	290.0	[0..8]	[277..96]
gi\|61816288 - gi\|61816288\|ref\|XP_591540.1\| PREDICTED: similar to translation initiation factor 3 47 kDa subunit is...	288.0	[0..8]	[277..104]
EIF3F_MOUSE, IF3... - Eukaryotic translation initiation factor 3 subunit 5 - Mus musculus (Mouse), Eukaryotic translation ...	286.0	[0..8]	[277..96]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALNLTVRV HPVVLFQVVD AFERRNADSH RVIGTLLGSV DKGVVEVTNC FCVPHKEHDD  60
   61 QVEAELSYAL DMYDLNRKVN SNESVVGWWA TGNDVTNHSS VIHEYYAREC NNPVHLTVDT 120
  121 SLQGGRMGLR AYVCIQLGVP GGKSGCMFTP IPVELTSYEP ETFGLKLLQK TVGVSPAHRP 180
  181 KTVPPMLDLA QISEASTKLQ SLLDLILKYV DDVIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [216-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKVTPDNAVG RQLLDLIHSV PHMTHEQFTQ MFNANVRNLL LVITLSQLIK TQLQLNEKLT  60
   61 FLPTA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits