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View Structure Prediction Details

Protein: gi|28381101, gi|...
Organism: Drosophila melanogaster
Length: 307 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28381101, gi|....

Description E-value Query
Range
Subject
Range
gi|115646308 - gi|115646308|gb|ABJ17012.1| IP09950p [Drosophila melanogaster]
306.0 [0..15] [307..12]

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Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKASFINLSV GEFTDPQDTA SQQEESVALK GHFYGVYLLC SQSLDPRYRG KCYVGFTVNP  60
   61 KRRIRQHNLG CDFGGARKTS RKGPWLMVMI VHGFPNNTVA LQFEWAWQQP SLSTRLKMYP 120
  121 ELKRKLPRET FFDYNFRILS NMLGVGPWNR LPLTVRWLET DYERPFSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1zg2A
Description: Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [169-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALPKHMEIVS GKVSISASQR RRPDDAVPPP PVAWASECHL CMQEMEQPEK SRLGCTNQMC  60
   61 RLTCHMVCLA NYLLGDEPGH YIPVGGECPL CETRLSWAAL LQRKRLLLGV PEELQDHDED 120
  121 LSDDIDVDSD IEDTPELSD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.37
Match: 2cklB
Description: No description for 2cklB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle