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View Structure Prediction Details

Protein: FBpp0293855, MED...
Organism: Drosophila melanogaster
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0293855, MED....

Description E-value Query
Range
Subject
Range
gi|118777428, gi... - gi|118777428|ref|XP_307924.3| ENSANGP00000021911 [Anopheles gambiae str. PEST], gi|116132773|gb|EAA0...
200.0 [0..3] [119..4]
gi|125776372, gi... - gi|54638998|gb|EAL28400.1| GA10401-PA [Drosophila pseudoobscura], gi|125776372|ref|XP_001359255.1| G...
199.0 [0..1] [119..1]
MED31_AEDAE - Mediator of RNA polymerase II transcription subunit 31 OS=Aedes aegypti GN=MED31 PE=3 SV=1
197.0 [0..3] [126..4]
mdt-31 - Yeast SOH1 protein like status:Confirmed UniProt:P91869 protein_id:CAB04242.1
190.0 [0..12] [141..1]
gi|91084217 - gi|91084217|ref|XP_968682.1| PREDICTED: similar to Mediator of RNA polymerase II transcription subun...
187.0 [0..4] [120..1]
gi|48122204 - gi|48122204|ref|XP_393244.1| PREDICTED: similar to Mediator of RNA polymerase II transcription subun...
183.0 [0..13] [128..26]
MED31_MOUSE - Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2
182.0 [0..11] [118..6]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKMYGKGKT AIESEELQKR RWQIELEFVQ CLSNPNYLNF LAQRGFFKDQ SFINYLKYLQ  60
   61 YWKEPDYAKY LMYPMCLYFL DLLQYEHFRR EIVNSQCCKF IDDQAILQWQ HYTRKRIKLI 120
  121 ENVTA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 72.318759
Match: PF05669.3
Description: No description for PF05669.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [126-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQQQQQQLQQ QQQQANGMEA ATGGESAAPT PNVNGSASTA DSQQTSSALQ PVQAQPGNPQ  60
   61 QQQQINGVAS GANIKLELN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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