| Protein: | 5-HT2-PA |
| Organism: | Drosophila melanogaster |
| Length: | 868 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 5-HT2-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
756.0 | [0..1] | [868..1] |
|
Region A: Residues: [1-249] |
1 11 21 31 41 51
| | | | | |
1 MEMQSYSGRG PSTGTSETAT ATAAVASASA SDTAATFTLR HFNCRLEEAD WPGPRQPFID 60
61 CEGSHTNSTS YTPSSLPTSK NLIEGPNNTF QCARQAIDEA EHNAFYSCDG ESPLSENCTL 120
121 RLKARLLRWP YEAYEHIRLA INGALSDYAS DKLSDSSSCD EGGMVLQCKL GQAHELLLCH 180
181 LQQLEREPLR EVGSAEESFS NDSLLQAFQI ELGAERDGLW SFLNLSELME PDHGFLGIMN 240
241 VTNTSLDMF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [250-555] |
1 11 21 31 41 51
| | | | | |
1 LPNLTALNTT STASTADMAT EFAVTKSFLD YSPHGYDFLF LFVVFFIFAG GLGNILVCLA 60
61 VALDRKLQNV TNYFLFSLAI ADLLVSLFVM PMGAIPAFLG YWPLGFTWCN IYVTCDVLAC 120
121 SSSILHMCFI SLGRYMGIRN PLGSRHRSTK RLTGIKIAIV WVMAMMVSSS ITVLGLVNEK 180
181 NIMPEPNICV INNRAFFVFG SLVAFYIPML MMVTTYALTI PLLRKKARFA AEHPESELFR 240
241 RLGGRFTLRP QHSQQQLQMF SSFSGSNNKF LSMGDGNRNF NTEGEMEEGG APSRRSGVEP 300
301 AERPLM
|
| Detection Method: | |
| Confidence: | 39.30103 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [556-868] |
1 11 21 31 41 51
| | | | | |
1 QQRTASSRSM GTVSFRNVVN GTSGAAGSGR RTTGTAHSSF RFSGAGIFRH SSSSPASSCH 60
61 STSTSRSSSF WRKHGGYPNL MDRLAIHLRL SLVPPSSHPN RRASVRVTIS QPQLGYPTNV 120
121 GGNGGRTVGA TEVGAGGNGS SAGRTSNSSL GGTSLMKIAT IQGPILNQSQ AAGGNHMVQK 180
181 VKPTALKPEE PQRNKVRPFK FAFNRVATPT LNLRFLNNRS KRNSLSANAV ATEQKATKVL 240
241 GLVFFTFVLC WSPFFILNII FAACPECQVP EHVVNTCLWL GYVSSTINPI IYTIFNRTFR 300
301 AAFIRLLKCN CKR
|
| Detection Method: | |
| Confidence: | 5.1 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
