YRC Public Data Repository - Protein Structure Prediction

Protein:	CG11137-PA
Organism:	Drosophila melanogaster
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11137-PA.

Description	E-value	Query Range	Subject Range
gi\|125978693, gi... - gi\|54642137\|gb\|EAL30886.1\| GA10785 [Drosophila pseudoobscura pseudoobscura], gi\|125978693\|ref\|XP_001... gi\|195160575, gi... - gi\|195160575\|ref\|XP_002021150.1\| GL25180 [Drosophila persimilis], gi\|194118263\|gb\|EDW40306.1\| GL2518... gi\|125978693\|ref... - GA10785-PA [Drosophila pseudoobscura], GA10785 [Drosophila pseudoobscura pseudoobscura]	256.0	[0..1]	[166..1]
gi\|58386165, gi\|... - gi\|58386165\|ref\|XP_314532.2\| ENSANGP00000016305 [Anopheles gambiae str. PEST], gi\|55240126\|gb\|EAA098...	241.0	[0..1]	[166..1]
EMC4_XENLA - ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4 PE=2 SV=1	236.0	[0..8]	[163..13]
EMC4_XENTR - ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4 PE=2 SV=1	235.0	[0..8]	[163..13]
gi\|12834476 - gi\|12834476\|dbj\|BAB22926.1\| unnamed protein product [Mus musculus]	235.0	[0..8]	[163..13]
gi\|90077506 - gi\|90077506\|dbj\|BAE88433.1\| unnamed protein product [Macaca fascicularis] TMEM85 - transmembrane protein 85 TMM85_PONPY - Transmembrane protein 85 - Pongo pygmaeus (Orangutan) gi\|109080509 - gi\|109080509\|ref\|XP_001087244.1\| PREDICTED: similar to CG11137-PA isoform 2 [Macaca mulatta] EMC4_PONAB - ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2 SV=1 ENSCJAT00000041516 - null	234.0	[0..8]	[165..13]
gi\|57108075 - gi\|57108075\|ref\|XP_535416.1\| PREDICTED: similar to CG11137-PA [Canis familiaris]	233.0	[0..8]	[165..13]
EMC4_BOVIN - ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2 SV=1 gi\|149692100 - gi\|149692100\|ref\|XP_001503724.1\| PREDICTED: similar to Transmembrane protein 85 (Cell proliferation-... gi\|194039184, gi... - gi\|194039200\|ref\|XP_001927127.1\| PREDICTED: similar to Transmembrane protein 85 (Cell proliferation-...	233.0	[0..8]	[165..13]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKQNPKKL KWALDFNGSK NADIPSPLGY NPSALVNQSE VVRDQRLVIK KSWDLALGPL  60
   61 KNIPMNLFIM YMSGNSISIF PIMMVGMMLI RPIKAIFTTQ VTSKMAEGAQ GTGQRIVYFL 120
  121 GNLANVALAL YKCQSMGLLP THASDWLAFV QPQTRLEYYG GGISFV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	1yq3D
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits