YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7172-PA
Organism:	Drosophila melanogaster
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7172-PA.

Description	E-value	Query Range	Subject Range
GL50803_4883 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=hypothetical protein \| location=GLCHR02:216520-... gi\|157433633, gi... - gi\|71078504\|ref\|XP_771761.1\| hypothetical protein GLP_546_74871_79250 [Giardia lamblia ATCC 50803], ... ctg02_33\|4883\|Hy... - protein	132.0	[0..28]	[227..360]
gi\|13183005 - gi\|13183005\|gb\|AAK15023.1\| IgA1 protease [Neisseria meningitidis]	126.0	[0..30]	[228..976]
gi\|114581421 - gi\|114581421\|ref\|XP_525949.2\| PREDICTED: bromodomain adjacent to zinc finger domain, 2B [Pan troglod...	108.0	[0..42]	[229..829]
gi\|74004366 - gi\|74004366\|ref\|XP_856818.1\| PREDICTED: similar to Bromodomain adjacent to zinc finger domain 2B (hW...	103.0	[0..42]	[229..828]
gi\|7549210 - gi\|7549210\|gb\|AAF63787.1\|AF142406_1 200 kDa antigen p200 [Babesia bigemina]	102.0	[0..9]	[231..496]
gi\|23509114, gi\|... - gi\|23509114\|ref\|NP_701782.1\| hypothetical protein PFL2110c [Plasmodium falciparum 3D7], gi\|23496955\|...	102.0	[0..11]	[219..1397]
BAZ2B - bromodomain adjacent to zinc finger domain, 2B gi\|162319380 - gi\|162319380\|gb\|AAI56488.1\| Bromodomain adjacent to zinc finger domain, 2B [synthetic construct]	101.0	[0..42]	[229..830]
gi\|62177117, gi\|... - gi\|62177117\|ref\|NP_001001182.2\| bromodomain adjacent to zinc finger domain, 2B [Mus musculus], gi\|12...	101.0	[0..42]	[229..747]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVGKISVVT RLPALRSCAQ YSSAAKAELP ASLVGDVDVE PTYPQTVDRS GLQPQHKNVL  60
   61 LNKLPYQEPH SWIHLTEKYQ RQAFGRYGAQ SNVNPKICFD SHGEKDSRQV MQLETLLKML 120
  121 EKNRAQKAEE LARINAREED IAKKMEKLTQ WKADLHAKIA KREADAAAAI QRKERLVEEV 180
  181 RRHFGFKVDT RDERFKEMLE QKEKEDKKKQ KEAKRKAKEE KMMAKLVEKA SV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits