YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr78Cc-PA
Organism:	Drosophila melanogaster
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr78Cc-PA.

Description	E-value	Query Range	Subject Range
gi\|108875723, gi... - gi\|157118418\|ref\|XP_001659105.1\| Pupal cuticle protein, putative [Aedes aegypti], gi\|108875723\|gb\|EA...	133.0	[0..1]	[118..1]
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	131.0	[0..27]	[114..79]
gi\|54641065, gi\|... - gi\|54641065\|gb\|EAL29816.1\| GA20507-PA [Drosophila pseudoobscura], gi\|125980091\|ref\|XP_001354078.1\| G...	130.0	[0..6]	[117..2]
gi\|194197783, gi... - gi\|195592100\|ref\|XP_002085774.1\| GD12126 [Drosophila simulans], gi\|194197783\|gb\|EDX11359.1\| GD12126 ... FBpp0310951, Edg... - The gene Ecdysone-dependent gene 78E is referred to in FlyBase by the symbol Dmel\Edg78E (CG7673, FB... gi\|194122294, gi... - gi\|195348495\|ref\|XP_002040784.1\| GM22150 [Drosophila sechellia], gi\|194122294\|gb\|EDW44337.1\| GM22150...	128.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKLSLCLLA ALMLANVYAD NINKDAVITR EDVNPADAEG NYQYAFETSN GIQAQEAGNV  60
   61 NGISGSSSYI SPEGVPISLT YVADENGFQP QGDHLPTAPP IPEAILRALE YIAAHPPQP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.0
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits