YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4289-PA
Organism:	Drosophila melanogaster
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4289-PA.

Description	E-value	Query Range	Subject Range
gi\|58388455, gi\|... - gi\|58388455\|ref\|XP_316300.2\| ENSANGP00000020646 [Anopheles gambiae str. PEST], gi\|55239037\|gb\|EAA115...	248.0	[0..38]	[280..1]
gi\|125977956\|ref... - GA18085-PA [Drosophila pseudoobscura], GA18085 [Drosophila pseudoobscura pseudoobscura] gi\|125977956, gi... - gi\|54641762\|gb\|EAL30512.1\| GA18085 [Drosophila pseudoobscura pseudoobscura], gi\|125977956\|ref\|XP_001...	243.0	[0..1]	[280..1]
gi\|73950922 - gi\|73950922\|ref\|XP_851201.1\| PREDICTED: similar to peroxisomal biogenesis factor 14 [Canis familiari...	230.0	[0..10]	[266..50]
PEX14_MOUSE - Peroxisomal membrane protein PEX14 OS=Mus musculus GN=Pex14 PE=1 SV=1	226.0	[0..10]	[266..2]
gi\|4126962, gi\|2... - gi\|4126962\|dbj\|BAA36835.1\| peroxisomal membrane anchor protein [Rattus norvegicus], gi\|25453374\|ref\|...	225.0	[0..10]	[266..2]
PEX14 - peroxisomal biogenesis factor 14 gi\|114553893 - gi\|114553893\|ref\|XP_001162201.1\| PREDICTED: similar to peroxisomal membrane anchor protein HsPex14p ... gi\|123984941, gi... - gi\|60821767\|gb\|AAX36586.1\| peroxisomal biogenesis factor 14 [synthetic construct], gi\|123998459\|gb\|A...	223.0	[0..10]	[266..2]
gi\|108996954 - gi\|108996954\|ref\|XP_001118790.1\| PREDICTED: similar to peroxisomal biogenesis factor 14 [Macaca mula...	217.0	[0..17]	[266..93]
gi\|157126035, gi... - gi\|157126035\|ref\|XP_001654504.1\| hypothetical protein AaeL_AAEL010368 [Aedes aegypti], gi\|108873430\|...	212.0	[0..8]	[280..3]
PEX14_CRILO - Peroxisomal membrane protein PEX14 OS=Cricetulus longicaudatus GN=PEX14 PE=2 SV=1	212.0	[0..10]	[266..2]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNNTDTGD TTVMATATSV QNDVEAGVDE QLPRESLITT AVSFLQNTKV RHTTLIQKQQ  60
   61 FLRSKGLTAH EIQLACERAG VFTQDPNKPN PNPN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.167491
Match:	PF04695.4
Description:	No description for PF04695.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [95-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVISIGSQLH ALQPQPTVLG RIREIIHSAA LFSGVVYAVY IFWKQYIAPY LFGKSKKKAV  60
   61 DEVLDDIDKK VETRTNDLNK EILAVRDLIT TQQREHAQQL NREFSNFRSD LDAIKGLLLN 120
  121 RKQFAGPVAP IAVPSIPAWQ LAGSPHHHHR HSGSDDNEKG DDAGSGSGSS ETEVVTKNSD 180
  181 SSLEIM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits