YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4186-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4186-PA, FBpp0....

Description	E-value	Query Range	Subject Range
AGAP011059-PA - Coiled-coil-helix-coiled-coil-helix domain-containing protein 7\|protein_coding\|3L:15804482:15804875:... gi\|58377832, gi\|... - gi\|58377832\|ref\|XP_308077.2\| AGAP011059-PA [Anopheles gambiae str. PEST], gi\|55246166\|gb\|EAA03845.2\|...	135.0	[0..1]	[82..1]
gi\|109086473 - gi\|109086473\|ref\|XP_001088006.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co...	132.0	[0..11]	[73..144]
gi\|194112664, gi... - gi\|195172219\|ref\|XP_002026896.1\| GL12810 [Drosophila persimilis], gi\|194112664\|gb\|EDW34707.1\| GL1281... gi\|125977948, gi... - gi\|54641758\|gb\|EAL30508.1\| GA18014 [Drosophila pseudoobscura pseudoobscura], gi\|125977948\|ref\|XP_001... gi\|54641758\|gb\|E... - GA18014-PA [Drosophila pseudoobscura], GA18014 [Drosophila pseudoobscura pseudoobscura]	132.0	[0..1]	[85..1]
gi\|73999401 - gi\|73999401\|ref\|XP_851609.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain contai...	131.0	[0..11]	[73..89]
CHCH7_MACFA - Coiled-coil-helix-coiled-coil-helix domain-containing protein 7 OS=Macaca fascicularis GN=CHCHD7 PE=...	122.0	[0..11]	[73..14]
gi\|119607185, gi... - gi\|68084462\|gb\|AAH02546.2\| Coiled-coil-helix-coiled-coil-helix domain containing 7 [Homo sapiens], g... ENSPTRT00000049678 - null	122.0	[0..11]	[73..26]
CHCH7_MOUSE - Coiled-coil-helix-coiled-coil-helix domain-containing protein 7 OS=Mus musculus GN=Chchd7 PE=1 SV=1 gi\|109476085, gi... - gi\|149061008\|gb\|EDM11618.1\| rCG30521, isoform CRA_a [Rattus norvegicus], gi\|149061007\|gb\|EDM11617.1\|...	120.0	[0..11]	[73..14]
CHCH7_BOVIN - Coiled-coil-helix-coiled-coil-helix domain-containing protein 7 OS=Bos taurus GN=CHCHD7 PE=3 SV=1	115.0	[0..11]	[73..14]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRNQNAEQD NPCLKEQELS FKCLNKNNFD RDKCEIYFAN YNNCKEFWNK VKTERRAKGI  60
   61 APYLPPLEER DGIKAEYMKG KPQQS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.18
Match:	1occH
Description:	Cytochrome c oxidase subunit h
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits