YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7770-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7770-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|49119498 - gi\|49119498\|gb\|AAH73619.1\| Eps15R protein [Xenopus laevis]	105.0	[0..1]	[122..402]
gi\|109123809 - gi\|109123809\|ref\|XP_001113811.1\| PREDICTED: similar to epidermal growth factor receptor pathway subs...	103.0	[0..1]	[122..508]
gi\|50761168 - gi\|50761168\|ref\|XP_418263.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	102.0	[0..1]	[121..398]
gi\|76621154 - gi\|76621154\|ref\|XP_876634.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	101.0	[0..1]	[121..403]
EPS15L1 - epidermal growth factor receptor pathway substrate 15-like 1	101.0	[0..1]	[122..403]
gi\|116117781, gi... - gi\|118791811\|ref\|XP_319960.3\| ENSANGP00000016740 [Anopheles gambiae str. PEST], gi\|116117781\|gb\|EAA1...	98.0	[0..1]	[122..425]
gi\|68399208 - gi\|68399208\|ref\|XP_696575.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	98.0	[0..1]	[122..405]
gi\|26331586 - gi\|26331586\|dbj\|BAC29523.1\| unnamed protein product [Mus musculus]	97.0	[0..1]	[123..401]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKSAALYK KMQAEIESYQ NLQKSCLKMV KQRAVLESQL NENKCVLDEL NLLGPDNKVY  60
   61 KLFGPVLVKQ ELEESRQNVG KRIEYISKEL KSSTDALENM EKDMLKHRES VAKYQQQCQV 120
  121 AAAMQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits