YRC Public Data Repository - Protein Structure Prediction

Protein:	lush-PB, lush-PA
Organism:	Drosophila melanogaster
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lush-PB, lush-PA.

Description	E-value	Query Range	Subject Range
FBpp0311428 - type=protein; loc=3R:complement(1798020..1798037,1798092..1798348,1798776..1798851,1798931..1799104)...	123.0	[0..5]	[153..28]
gi\|39840707, gi\|... - gi\|39840707\|emb\|CAE00444.1\| Olfactory Specific F [Drosophila erecta], gi\|194898937\|ref\|XP_001979019....	121.0	[0..5]	[153..8]
gi\|145651318, gi... - gi\|32135155\|emb\|CAD99000.1\| olfactory specific F protein [Drosophila simulans], gi\|195568613\|ref\|XP_... gi\|39840703 - gi\|39840703\|emb\|CAD91563.1\| Olfactory Specific F protein [Drosophila mauritiana] gi\|195502156, gi... - gi\|195502156\|ref\|XP_002098099.1\| GE24126 [Drosophila yakuba], gi\|194184200\|gb\|EDW97811.1\| GE24126 [D... gi\|194133525, gi... - gi\|195343851\|ref\|XP_002038504.1\| GM10580 [Drosophila sechellia], gi\|194133525\|gb\|EDW55041.1\| GM10580...	121.0	[0..5]	[153..8]
gi\|5081571 - gi\|5081571\|gb\|AAD39447.1\|AF133635_1 pheromone binding protein [Ostrinia nubilalis]	120.0	[0..8]	[153..1]
gi\|19071280 - gi\|19071280\|gb\|AAL84183.1\|AF437888_1 odorant binding protein [Anopheles gambiae]	119.0	[0..1]	[153..1]
gi\|5081561 - gi\|5081561\|gb\|AAD39442.1\|AF133630_1 pheromone binding protein [Ostrinia furnacalis]	119.0	[0..8]	[153..1]
gi\|58396184, gi\|... - gi\|58396184\|ref\|XP_321724.2\| ENSANGP00000017561 [Anopheles gambiae str. PEST], gi\|55233939\|gb\|EAA010...	119.0	[0..3]	[153..105]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHWKRRSSA VFAIVLQVLV LLLPDPAVAM TMEQFLTSLD MIRSGCAPKF KLKTEDLDRL  60
   61 RVGDFNFPPS QDLMCYTKCV SLMAGTVNKK GEFNAPKALA QLPHLVPPEM MEMSRKSVEA 120
  121 CRDTHKQFKE SCERVYQTAK CFSENADGQF MWP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.09691
Match:	1oohA
Description:	Complex of Drosophila odorant binding protein LUSH with butanol
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
odorant binding	6.54639467875661	bayes_pls_golite062009
pheromone binding	4.60846885062367	bayes_pls_golite062009
phenylalkylamine binding	3.4460817037949	bayes_pls_golite062009
binding	1.84061726818261	bayes_pls_golite062009
phthalate binding	1.4681002768756	bayes_pls_golite062009
diphenyl phthalate binding	1.4681002768756	bayes_pls_golite062009
dibutyl phthalate binding	1.4681002768756	bayes_pls_golite062009
ethanol binding	0.217302871879979	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: