YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr76Bb-PA
Organism:	Drosophila melanogaster
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr76Bb-PA.

Description	E-value	Query Range	Subject Range
gi\|112983758, gi... - gi\|12862591\|dbj\|BAB32481.1\| cuticle protein [Bombyx mori], gi\|112983758\|ref\|NP_001036866.1\| cuticle ...	146.0	[0..2]	[167..1]
gi\|54641081, gi\|... - gi\|54641081\|gb\|EAL29832.1\| GA20079-PA [Drosophila pseudoobscura], gi\|125980121\|ref\|XP_001354093.1\| G...	141.0	[0..31]	[187..1]
gi\|24660811, gi\|... - gi\|24660811\|ref\|NP_648208.1\| CG7072-PA [Drosophila melanogaster], gi\|23093945\|gb\|AAF50443.2\| CG7072-...	140.0	[0..41]	[188..42]
gi\|66564779 - gi\|66564779\|ref\|XP_624729.1\| PREDICTED: similar to CG1259-PB [Apis mellifera]	128.0	[0..2]	[146..168]
gi\|108882505, gi... - gi\|157126718\|ref\|XP_001654719.1\| cuticle protein, putative [Aedes aegypti], gi\|108882505\|gb\|EAT46730...	125.0	[0..80]	[159..50]
AGAP010124-PA - CPR98: cuticular protein RR-2 family (CPR98)\|protein_coding\|3R:49242965:49243654:1\|gene:AGAP010124 gi\|119114475, gi... - gi\|119114475\|ref\|XP_001238134.1\| cuticular protein 98, RR-2 family (AGAP010124-PA) [Anopheles gambia...	123.0	[0..2]	[168..1]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFSGGLFF ALLVGASWAA PHGGHATSYS SVTKHEGPVH KSLGYGYDHD VVSAYGGIYG  60
   61 HGYPSVGHSG YGYGYDKHEP HHYPKYQFDY GVKDAHTGDQ KSQWETRDGD KVKGSYSLKE 120
  121 SDGTTRVVEY TADDHNGFNA VVKKLGHAHH PQVYHKGYGH GDIYDADYGY GHDVAQYGGY 180
  181 GYGHGGHASS YVSVKQLH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.721246
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits