YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr76Ba-PA
Organism:	Drosophila melanogaster
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr76Ba-PA.

Description	E-value	Query Range	Subject Range
gi\|112983758, gi... - gi\|12862591\|dbj\|BAB32481.1\| cuticle protein [Bombyx mori], gi\|112983758\|ref\|NP_001036866.1\| cuticle ...	141.0	[0..1]	[180..1]
gi\|125977826\|ref... - GA21668-PA [Drosophila pseudoobscura], GA21668 [Drosophila pseudoobscura pseudoobscura] gi\|125977826, gi... - gi\|54641697\|gb\|EAL30447.1\| GA21668 [Drosophila pseudoobscura pseudoobscura], gi\|125977826\|ref\|XP_001...	139.0	[0..1]	[204..1]
AGAP010124-PA - CPR98: cuticular protein RR-2 family (CPR98)\|protein_coding\|3R:49242965:49243654:1\|gene:AGAP010124 gi\|119114475, gi... - gi\|119114475\|ref\|XP_001238134.1\| cuticular protein 98, RR-2 family (AGAP010124-PA) [Anopheles gambia...	131.0	[0..1]	[181..1]
FBpp0309533, Cry-PA - The gene Crystallin is referred to in FlyBase by the symbol Dmel\Cry (CG16963, FBgn0005664). It is a...	127.0	[0..83]	[167..60]
gi\|48121956 - gi\|48121956\|ref\|XP_393241.1\| PREDICTED: similar to CG7072-PA [Apis mellifera]	126.0	[0..4]	[163..12]
gi\|108882505, gi... - gi\|157126718\|ref\|XP_001654719.1\| cuticle protein, putative [Aedes aegypti], gi\|108882505\|gb\|EAT46730...	125.0	[0..93]	[173..49]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHQLSILCC ALLGVAAASY IPHGGYSHEH GVGYSIQTHH EAPKQWQDHH QAHHQWVDVP  60
   61 KAHSWGTVQD HHHQQWAPVA AHDSHHQWSH HEEPKHHP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYEFNYGVKD TKTGDIKQQW ETRDGDKVKG GYTMKEADGR TRIVEYTADS HNGFQATVKH  60
   61 VGHASHLEHS HSYGQQYGHG HGHATSYVDV KQDTSSKWED KSNKWW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.187087
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits