YRC Public Data Repository - Protein Structure Prediction

Protein:	Bet1-PB, Bet1-PA
Organism:	Drosophila melanogaster
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Bet1-PB, Bet1-PA.

Description	E-value	Query Range	Subject Range
BET1_RAT - BET1 homolog OS=Rattus norvegicus GN=Bet1 PE=1 SV=1	104.0	[0..8]	[117..10]
gi\|148877424, gi... - gi\|76670646\|ref\|XP_873653.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin...	104.0	[0..9]	[117..11]
BET1_MOUSE - BET1 homolog OS=Mus musculus GN=Bet1 PE=1 SV=1	104.0	[0..8]	[117..10]
gi\|57095986 - gi\|57095986\|ref\|XP_532463.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin...	103.0	[0..9]	[117..11]
gi\|94733177, gi\|... - gi\|94733177\|emb\|CAK04101.1\| novel protein similar to vertebrate syntaxin 6 (STX6) [Danio rerio], gi\|...	103.0	[0..3]	[116..143]
gi\|116193839, gi... - gi\|88182550\|gb\|EAQ90018.1\| hypothetical protein CHGG_06637 [Chaetomium globosum CBS 148.51], gi\|1161...	102.0	[0..11]	[114..212]
gi\|159127865 - gi\|159127865\|gb\|EDP52980.1\| ER-Golgi SNARE complex subunit (Sed5), putative [Aspergillus fumigatus A... gi\|66852489, gi\|... - gi\|71000315\|ref\|XP_754852.1\| ER-Golgi SNARE complex subunit (Sed5) [Aspergillus fumigatus Af293], gi...	101.0	[0..7]	[114..237]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNNYPYQP LNQHPSGPHP ASHDALEAEN EQAAEELKQK IGALKSLTID IGNEVRYQDK  60
   61 LLRGIDDDMD RTSGFLGNAM TRVVRLAKQG GGARQMCYMF LFILVVFLIL WITLKFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	1dn1B
Description:	Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits