YRC Public Data Repository - Protein Structure Prediction

Protein:	l(3)neo26-PB, l(...
Organism:	Drosophila melanogaster
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(3)neo26-PB, l(....

Description	E-value	Query Range	Subject Range
gi\|66771333 - gi\|66771333\|gb\|AAY54978.1\| IP06580p [Drosophila melanogaster]	270.0	[0..4]	[221..2]
gi\|42538744 - gi\|42538744\|emb\|CAF28461.1\| ms(3)K81 protein [Drosophila mauritiana]	269.0	[0..4]	[221..1]
gi\|48290333 - gi\|48290333\|emb\|CAG33741.1\| K81 protein [Drosophila orena]	262.0	[0..4]	[221..1]
gi\|42538746, gi\|... - gi\|42538746\|emb\|CAF28462.1\| ms(3)K81 protein [Drosophila sechellia], gi\|195349784\|ref\|XP_002041422.1...	260.0	[0..4]	[221..1]
gi\|42538742 - gi\|42538742\|emb\|CAF28460.1\| ms(3)K81 protein [Drosophila simulans]	259.0	[0..4]	[221..1]
gi\|194907803, gi... - gi\|42538750\|emb\|CAF28464.1\| ms(3)K81 protein [Drosophila erecta], gi\|194907803\|ref\|XP_001981630.1\| m...	259.0	[0..4]	[221..1]
gi\|42538752 - gi\|42538752\|emb\|CAF28465.1\| ms(3)K81 protein [Drosophila santomea]	245.0	[0..4]	[221..1]
gi\|42538748 - gi\|42538748\|emb\|CAF28463.1\| ms(3)K81 protein [Drosophila yakuba]	229.0	[0..4]	[221..1]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIDEGSRV ERRFCAVGNH TLRKPYRQLN NKYLVRFACL LNSEIRAGNL ICCKCYTDLV  60
   61 RLYRKKNDNA KRHKMARETA ASITDVSGSQ SSSHQSAPSL HVSGQSSEFG ASYSEGGIVT 120
  121 PDEELCSHRS LSQDSDNVPT TSAAAIQKRQ LARANLMVKP SQRLSLAQTT PDCDDYDPNS 180
  181 NLSLNAVNGT RLPHIQPIPK RRPTVLDKQS MDIYLMGTTG G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits