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View Structure Prediction Details

Protein: skl-PA
Organism: Drosophila melanogaster
Length: 108 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for skl-PA.

Description E-value Query
Range
Subject
Range
gi|17945245 - gi|17945245|gb|AAL48680.1| RE14076p [Drosophila melanogaster]
162.0 [0..1] [108..1]
gi|54640966, gi|... - gi|54640966|gb|EAL29717.1| GA12469-PA [Drosophila pseudoobscura], gi|125979897|ref|XP_001353981.1| G...
90.0 [0..55] [108..259]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPFFEEEH APKSEPSGDQ VDSPMAFSID PGHDQVDFEG PPSAAEELPP PGATSEPVAP  60
   61 PSAEEQLLAW KFLAITMCKV LKQFYQQHKS SGKSSKLKAT VQIQPQAQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.468 a.216.1 Description not found.
View Download 0.392 a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.390 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.390 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.389 a.25.1 Ferritin-like
View Download 0.382 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.347 a.26.1 4-helical cytokines
View Download 0.304 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.300 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.271 f.14.1 Voltage-gated potassium channels


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle