YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpS26-PA
Organism:	Drosophila melanogaster
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpS26-PA.

Description	E-value	Query Range	Subject Range
GL50803_4883 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=hypothetical protein \| location=GLCHR02:216520-... gi\|157433633, gi... - gi\|71078504\|ref\|XP_771761.1\| hypothetical protein GLP_546_74871_79250 [Giardia lamblia ATCC 50803], ... ctg02_33\|4883\|Hy... - protein	121.0	[0..25]	[201..389]
gi\|56405239 - gi\|56405239\|gb\|AAV87213.1\| myosin VIIa isoform 2 [Mus musculus]	106.0	[0..8]	[198..744]
gi\|13345187 - gi\|13345187\|gb\|AAK19244.1\|AF312916_1 reticulocyte binding protein 2 homolog A [Plasmodium falciparum...	100.0	[0..48]	[183..2739]
RBP2A_PLAF7 - Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=1 SV... gi\|33413772 - gi\|33413772\|gb\|AAN39443.1\| normocyte binding protein 2a [Plasmodium falciparum]	100.0	[0..48]	[183..2739]
gi\|54640952\|gb\|E... - GA20288-PA [Drosophila pseudoobscura], GA20288 [Drosophila pseudoobscura pseudoobscura] gi\|125979869, gi... - gi\|54640952\|gb\|EAL29703.1\| GA20288 [Drosophila pseudoobscura pseudoobscura], gi\|125979869\|ref\|XP_001...	99.0	[0..1]	[225..1]
gi\|74004366 - gi\|74004366\|ref\|XP_856818.1\| PREDICTED: similar to Bromodomain adjacent to zinc finger domain 2B (hW...	93.0	[0..7]	[171..895]
gi\|11353751 - pir\|\|A81937 IgA-specific metalloendopeptidase (EC 3.4.24.13) NMA0905 [imported] - Neisseria meningit... gi\|121051831, gi... - gi\|7379617\|emb\|CAB84182.1\| IgA1 protease [Neisseria meningitidis Z2491], gi\|218767823\|ref\|YP_0023423...	93.0	[0..33]	[192..1008]
BAZ2B - bromodomain adjacent to zinc finger domain, 2B gi\|162319380 - gi\|162319380\|gb\|AAI56488.1\| Bromodomain adjacent to zinc finger domain, 2B [synthetic construct]	92.0	[0..7]	[171..897]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRAGCQLLT QSTLPTGKTV GNSFALEFVR WRRKPRWLPV AKSKMFRVPE RKKQSEEERT  60
   61 ELMRLHNQYK TQLRSVRQFL REEVVRHEET STADHIVLTP EQEEAEFQKC LDANAAWNAA 120
  121 IAKERDQRLA KKREEKVAYI QERLEAQQLR EEERKEQANQ RVLLEIERSK NYITRENLDA 180
  181 AIETALANPV DHNFAIDMAG NLYHGRSTSQ LPDATPEPNQ QVLSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits