YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0298344, CG3...
Organism:	Drosophila melanogaster
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0298344, CG3....

Description	E-value	Query Range	Subject Range
gi\|46129366, gi\|... - gi\|46129366\|ref\|XP_389044.1\| hypothetical protein FG08868.1 [Gibberella zeae PH-1], gi\|42549199\|gb\|E...	325.0	[0..2]	[263..281]
gi\|114626918 - gi\|114626918\|ref\|XP_520291.2\| PREDICTED: coenzyme Q4 homolog isoform 2 [Pan troglodytes]	319.0	[0..14]	[264..9]
COQ4 - coenzyme Q4 homolog (S. cerevisiae) HGNC:19693\|MIM:6... - Q4 homolog (S. cerevisiae) gi\|117646840 - gi\|117646840\|emb\|CAL37535.1\| hypothetical protein [synthetic construct]	317.0	[0..14]	[264..9]
gi\|49094866, gi\|... - gi\|67537174\|ref\|XP_662361.1\| hypothetical protein AN4757.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	316.0	[0..2]	[263..20]
COQ4_RAT - Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Rattus norvegicus GN=Coq4 PE=2 SV=1	313.0	[0..1]	[264..4]
COQ4_MOUSE - Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Mus musculus GN=Coq4 PE=1 SV=1	311.0	[0..26]	[264..20]
COQ4_AEDAE - Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Aedes aegypti GN=AAEL014646 PE=3 SV=1	309.0	[0..24]	[265..30]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQRCLRLQK PLALRRGLRL AQANSQAVAT EAPEAEPLDA FERQYLKERI EISPFQRLFL  60
   61 GAGSSIAALL NPR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [74-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHDMIACLGE TTGEDALWTI LDTMQASEEG QRIMADKPRI HTSTIDFKYL ETLPPDTFGA  60
   61 AYVKFLKDNQ VTPDSRMAVR FLEDPKLAYL MTRYRECHDL IHTVLDMPTN MLGEVAVKWV 120
  121 EALNTGLPMC YGGAVFGAVR LRPKQRRAYL KHYLPWALEN GKRTKPLMPV YWEKRWEQNI 180
  181 HELRSELGIT VLNKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits