YRC Public Data Repository - Protein Structure Prediction

Protein:	Mip-PA
Organism:	Drosophila melanogaster
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Mip-PA.

Description	E-value	Query Range	Subject Range
gi\|54640787, gi\|... - gi\|54640787\|gb\|EAL29538.1\| GA19609-PA [Drosophila pseudoobscura], gi\|125979543\|ref\|XP_001353804.1\| G...	209.0	[0..21]	[206..22]
PTSP_BOMMO - Prothoracicostatic peptide OS=Bombyx mori PE=1 SV=2	127.0	[0..64]	[206..66]
gi\|157131546, gi... - gi\|157131546\|ref\|XP_001655873.1\| allatostatin, B-type, putative [Aedes aegypti], gi\|108871490\|gb\|EAT...	96.0	[0..64]	[211..54]
AGAP000833-PA, A... - MIP: myoinhibitory-like peptide\|protein_coding\|X:15383955:15384528:-1\|gene:AGAP000833, MIP: myoinhib... gi\|118788518, gi... - gi\|118788518\|ref\|XP_316799.3\| myoinhibitory-like peptide (AGAP000833-PA) [Anopheles gambiae str. PES...	87.0	[0..149]	[208..91]
gi\|56310553 - gi\|56310553\|emb\|CAG28935.1\| preproallatostatin B [Gryllus bimaculatus]	61.0	[0..132]	[207..11]
CP1_APLCA - Cerebral peptide 1 OS=Aplysia californica PE=1 SV=2	52.0	[0..74]	[206..49]
gi\|228795 - gi\|228795\|prf\|\|1811269A prepro-APGWamide	50.0	[0..74]	[206..56]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHTKTRRTY GFLMVLLILG SACGNLVASG SAGSPPSNEP GGGGLSEQVV LDQLSESDLY  60
   61 GNNKRAWQSL QSSWGKRSSS GDVSDPDIYM TGHFVPLVIT DGTNTIDWDT FERLASGQSA 120
  121 QQQQQQPLQQ QSQSGEDFDD LAGEPDVEKR AWKSMNVAWG KRRQAQGWNK FRGAWGKREP 180
  181 TWNNLKGMWG KRDQWQKLHG GWGKRSQLPS N

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.19
Match:	2bibA
Description:	Crystal structure of the complete modular teichioic acid phosphorylcholine esterase Pce (CbpE) from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits