YRC Public Data Repository - Protein Structure Prediction

Protein:	a10-PA
Organism:	Drosophila melanogaster
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for a10-PA.

Description	E-value	Query Range	Subject Range
gi\|454078, gi\|40... - gi\|454078\|gb\|AAC46473.1\| A10, gi\|408477\|gb\|AAA21358.1\| OS-D, gi\|2498688\|sp\|Q27377\|OB10_DROME Putativ...	268.0	[0..1]	[155..1]
gi\|21898673 - gi\|21898673\|gb\|AAM77025.1\| chemosensory protein [Leucophaea maderae] gi\|21898673\|gb\|A... - chemosensory protein [Leucophaea maderae]	193.0	[0..35]	[150..15]
gi\|194113316, gi... - gi\|195173353\|ref\|XP_002027456.1\| GL15312 [Drosophila persimilis], gi\|194113316\|gb\|EDW35359.1\| GL1531... gi\|77415544 - gi\|77415544\|emb\|CAJ01441.1\| hypothetical protein [Drosophila pseudoobscura] gi\|198139680, gi... - gi\|198462078\|ref\|XP_001352332.2\| GA19747 [Drosophila pseudoobscura pseudoobscura], gi\|198139680\|gb\|E...	192.0	[0..14]	[153..12]
gi\|82792665 - gi\|82792665\|gb\|ABB91378.1\| chemosensory protein [Helicoverpa assulta]	179.0	[0..43]	[155..13]
gi\|7960304 - gi\|7960304\|gb\|AAF71289.1\|AF255918_1 chemosensory protein [Mamestra brassicae]	179.0	[0..43]	[151..13]
gi\|2443450 - gi\|2443450\|gb\|AAC47827.1\| olfactory protein [Cactoblastis cactorum]	175.0	[0..39]	[155..13]
gi\|38048453 - gi\|38048453\|gb\|AAR10129.1\| similar to Drosophila melanogaster PebIII [Drosophila yakuba]	175.0	[0..46]	[145..15]
gi\|21898574 - gi\|21898574\|gb\|AAM77040.1\| chemosensory protein 2 [Heliothis virescens]	174.0	[0..43]	[149..15]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQPGFRRAI GHVSLVVALM CTTCFQVEGL PHPPATSPSP MMERMVEQAY DDKFDNVDLD  60
   61 EILNQERLLI NYIKCLEGTG PCTPDAKMLK EILPDAIQTD CTKCTEKQRY GAEKVTRHLI 120
  121 DNRPTDWERL EKIYDPEGTY RIKYQEMKSK ANEEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1k19A
Description:	Chemosensory protein Csp2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits