YRC Public Data Repository - Protein Structure Prediction

Protein:	Smn-PA, FBpp0302954
Organism:	Drosophila melanogaster
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Smn-PA, FBpp0302954.

Description	E-value	Query Range	Subject Range
SMN_BOVIN - Survival motor neuron protein OS=Bos taurus GN=SMN1 PE=2 SV=2	243.0	[0..2]	[218..24]
gi\|13259512, gi\|... - gi\|169167330\|ref\|XP_001713783.1\| PREDICTED: hypothetical protein isoform 2 [Homo sapiens], gi\|169167... gi\|114599811 - gi\|114599811\|ref\|XP_001156259.1\| PREDICTED: survival of motor neuron 1, telomeric isoform 3 [Pan tro...	242.0	[0..2]	[224..28]
gi\|31075799 - gi\|31075799\|gb\|AAP42462.1\| survival motor neuron [Canis familiaris]	242.0	[0..2]	[224..19]
SMN_FELCA - Survival of motor neuron protein OS=Felis catus GN=SMN1 PE=2 SV=1	236.0	[0..2]	[224..25]
gi\|55716074 - gb\|AAH86114.1\| Unknown (protein for MGC:98514) [Xenopus laevis] SMN_MOUSE - Survival motor neuron protein OS=Mus musculus GN=Smn1 PE=1 SV=1	233.0	[0..2]	[224..25]
gi\|45383718, gi\|... - gi\|45383718\|ref\|NP_989530.1\| survival of motor neuron [Gallus gallus], gi\|13183642\|gb\|AAK15281.1\| su...	233.0	[0..2]	[222..14]
SMN_PONAB - Survival motor neuron protein OS=Pongo abelii GN=SMN1 PE=2 SV=1 gi\|55726440 - gi\|55726440\|emb\|CAH89989.1\| hypothetical protein [Pongo abelii]	232.0	[0..2]	[224..28]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDETNAAVW DDSLLVKTYD ESVGLAREAL ARRLADSTNK REEENAAAAE EEAGEISATG  60
   61 GATSPEPVSF KVGDYARATY VDGVDYEGAV VSINEEKGTC VLRYLGYENE QEVLLVDLLP 120
  121 SWGKRVRREQ FLIAKKDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.045757
Match:	2o4xA
Description:	No description for 2o4xA was found.

Predicted Domain #2

Region A:
Residues: [139-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEQLSRPKAS AGSHSKTPKS SRRSRISGGL VMPPMPPVPP MIVGQGDGAE QDFVAMLTAW  60
   61 YMSGYYTGLY QGKKEASTTS GKKKTPKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits