YRC Public Data Repository - Protein Structure Prediction

Protein:	gdl-PA, FBpp0306...
Organism:	Drosophila melanogaster
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gdl-PA, FBpp0306....

Description	E-value	Query Range	Subject Range
gi\|6065829, gi\|1... - gi\|6065829\|emb\|CAB58351.1\| gdl [Drosophila melanogaster], pir\|\|S22881 gonadal protein gdl - fruit fl...	310.0	[0..1]	[194..1]
gi\|54641905, gi\|... - gi\|54641905\|gb\|EAL30654.1\| GA17270-PA [Drosophila pseudoobscura], gi\|125978241\|ref\|XP_001353153.1\| G...	273.0	[0..1]	[194..1]
gi\|108884085, gi... - gi\|157107480\|ref\|XP_001649799.1\| hypothetical protein AaeL_AAEL000645 [Aedes aegypti], gi\|108884085\|...	267.0	[0..12]	[194..278]
gi\|58393558, gi\|... - gi\|58393558\|ref\|XP_320165.2\| ENSANGP00000011623 [Anopheles gambiae str. PEST], gi\|55234262\|gb\|EAA001...	258.0	[0..27]	[194..26]
gi\|114685051, gi... - gi\|114685051\|ref\|XP_514972.2\| PREDICTED: DiGeorge syndrome critical region protein 6 isoform 2 [Pan ...	229.0	[0..30]	[194..18]
gi\|109451706, gi... - gi\|109451706\|emb\|CAK54724.1\| DGCR6 [synthetic construct], gi\|109451128\|emb\|CAK54425.1\| DGCR6 [synthe... HGNC:2846\|MIM:60... - syndrome critical region gene 6 DGCR6 - DiGeorge syndrome critical region gene 6	228.0	[0..30]	[194..18]
gi\|54695688 - gi\|54695688\|gb\|AAV38216.1\| DiGeorge syndrome critical region gene 6 [synthetic construct]	227.0	[0..30]	[194..18]
gi\|109093329 - gi\|109093329\|ref\|XP_001082214.1\| PREDICTED: similar to DiGeorge syndrome critical region protein 6 [...	223.0	[0..30]	[194..18]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIPATSEG SANTSEAVVE YQQPTPEFLQ RKIYFLVDQL RTYHSELPEN LQTRISYDLL  60
   61 TELANCVLND GIFVIVKALM ELQHETERHL IKIRMQAENE YEIEVAEWRS KIKDPEELRH 120
  121 ILGLMKIKHT KKLHESDTKI IEILDQKVND QQSTLQKAGV PGFYVTENPK EIKIQMFLLD 180
  181 FILRLSRLKY EPGK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	147.283997
Match:	PF07324.2
Description:	No description for PF07324.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits