YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7294288, gi\|2...
Organism:	Drosophila melanogaster
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7294288, gi|2....

Description	E-value	Query Range	Subject Range
gi\|157817963, gi... - gi\|62658006\|ref\|XP_573301.1\| PREDICTED: similar to CG5359-PA [Rattus norvegicus], gi\|157817963\|ref\|N...	176.0	[0..1]	[142..1]
TC1D2_MOUSE - Tctex1 domain-containing protein 2 OS=Mus musculus GN=Tctex1d2 PE=1 SV=1	174.0	[0..1]	[142..1]
gi\|79156971 - gi\|79156971\|gb\|AAI08236.1\| TCTEX1D2 protein [Bos taurus]	174.0	[0..13]	[142..59]
gi\|55621782 - gi\|55621782\|ref\|XP_516972.1\| PREDICTED: hypothetical protein [Pan troglodytes] TCTEX1D2 - Tctex1 domain containing 2	172.0	[0..15]	[142..16]
gi\|22749513, gi\|... - gi\|22749513\|ref\|NP_689986.1\| Tctex1 domain containing 2 [Homo sapiens], gi\|18088953\|gb\|AAH21177.1\| T...	172.0	[0..15]	[142..16]
gi\|109054279 - gi\|109054279\|ref\|XP_001100846.1\| PREDICTED: similar to CG5359-PA [Macaca mulatta]	170.0	[0..17]	[142..17]
CG7276-PB - This gene is referred to in FlyBase by the symbol Dmel\CG7276 (CG7276, FBgn0036499). It is a protein...	167.0	[0..1]	[142..30]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSDSDEEW EPGNEDKPAS DVTIYNYYNM GPAFGKKFPL PYIRLMIAQV VKEKLANKTY  60
   61 NQSEALKWTR EVADDINIKM KGRGSSPRFK HVVNVMLYQQ TGAGCFYGAR AIWDELSDDY 120
  121 ITFTFDGGSF ICIAAVFGCY QY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1xdxA
Description:	Solution Structure of the Tctex1 Light Chain From Chlamydomonas Inner Dynein Arm I1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits