YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17300-PA
Organism:	Drosophila melanogaster
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17300-PA.

Description	E-value	Query Range	Subject Range
gi\|51092242 - gi\|51092242\|gb\|AAT94534.1\| AT16129p [Drosophila melanogaster]	250.0	[0..1]	[152..43]
gi\|89272892, gi\|... - gi\|89272892\|emb\|CAJ82967.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isof...	197.0	[0..1]	[142..1]
AT5F1_PONAB - ATP synthase F(0) complex subunit B1, mitochondrial OS=Pongo abelii GN=ATP5F1 PE=2 SV=1 AT5F1_PONPY - ATP synthase B chain, mitochondrial precursor - Pongo pygmaeus (Orangutan)	194.0	[0..1]	[142..1]
AT5F1_BOVIN - ATP synthase F(0) complex subunit B1, mitochondrial OS=Bos taurus GN=ATP5F1 PE=1 SV=2	193.0	[0..1]	[142..1]
gi\|148234340, gi... - gi\|6911053\|gb\|AAF31360.1\| ATP synthase subunit B [Xenopus laevis], gi\|28981424\|gb\|AAH48772.1\| MGC533...	191.0	[0..1]	[142..1]
gi\|118795248, gi... - gi\|118795248\|ref\|XP_322024.3\| ENSANGP00000012069 [Anopheles gambiae str. PEST], gi\|116116680\|gb\|EAA0...	189.0	[0..1]	[142..1]
gi\|73959885 - gi\|73959885\|ref\|XP_537027.2\| PREDICTED: similar to ATP synthase B chain, mitochondrial precursor [Ca...	186.0	[0..5]	[142..21]
gi\|41394381 - gi\|41394381\|gb\|AAS02294.1\| ATP synthase subunit b [Bombina orientalis]	185.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRLALRPL TVATSRSATT HSAQGLSRLP GHGSPGKVRP GFPSDNWVKG PMGVGLLAYI  60
   61 CSGDCCAIKH EHSGLSLGIM EDGYYSSGIT IGILTTFAVI RLLPAIVKWA DSEIIKIESE 120
  121 YEKSRETKIK VLSISPSNGN KDPSKDNADQ NV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	2clyA
Description:	No description for 2clyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits