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View Structure Prediction Details

Protein: ste14-PA, FBpp03...
Organism: Drosophila melanogaster
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ste14-PA, FBpp03....

Description E-value Query
Range
Subject
Range
LBR_MOUSE - Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2
225.0 [0..4] [293..290]
gi|62088608 - gi|62088608|dbj|BAD92751.1| lamin B receptor variant [Homo sapiens]
208.0 [0..4] [293..280]
LBR_PONPY - Lamin-B receptor - Pongo pygmaeus (Orangutan)
LBR_PONAB - Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1
208.0 [0..4] [293..279]
gi|109018100, gi... - gi|109018102|ref|XP_001094600.1| PREDICTED: lamin B receptor isoform 4 [Macaca mulatta], gi|10901810...
208.0 [0..4] [293..279]
gi|114572885, gi... - gi|114572887|ref|XP_001137563.1| PREDICTED: lamin B receptor isoform 4 [Pan troglodytes], gi|1145728...
208.0 [0..4] [293..279]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAKSRVASP GAGGTSLCSE GRISLYCFLI TAALVLIPSV PQNLYGVVPQ VWGAVLWGPF  60
   61 LYYALINMII RFVLRNHDYQ VAIRASFLGF AMAVSVLVIC FAPTEWQQFG AYGCFMSLFH 120
  121 YSEFLVIAFA NPRTL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLDSFMLNHS VHYGLAAAAS WIEFSLEVYY LPQFKRYGYI WVAGVVLCLL GEMVRKAAII  60
   61 TAGRSFTHLV QNEKHSEHKL ITSGIYAYCR HPSYVGWFWW SIGTQIVLLN PICICIYTLV 120
  121 SWLFFHDRIY VEEYSLLNFF QSDYVRYQKR VPTGLPFIRG YLVD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.017729
Match: PF04140.5
Description: No description for PF04140.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle