YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL20-PA
Organism:	Drosophila melanogaster
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL20-PA.

Description	E-value	Query Range	Subject Range
gi\|125978937, gi... - gi\|54642263\|gb\|EAL31012.1\| GA10871 [Drosophila pseudoobscura pseudoobscura], gi\|125978937\|ref\|XP_001... gi\|194118434, gi... - gi\|195160922\|ref\|XP_002021321.1\| GL24871 [Drosophila persimilis], gi\|194118434\|gb\|EDW40477.1\| GL2487... gi\|54642263\|gb\|E... - GA10871-PA [Drosophila pseudoobscura], GA10871 [Drosophila pseudoobscura pseudoobscura]	175.0	[0..1]	[150..1]
RL20_CHESB - 50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1	168.0	[0..13]	[138..6]
sp\|A0L4J9\|RL20_MAGMM - 50S ribosomal protein L20 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplT... RL20_MAGMM - 50S ribosomal protein L20 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplT...	166.0	[0..13]	[124..6]
RL20_SHELP - 50S ribosomal protein L20 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplT PE=3 SV=1	165.0	[0..13]	[125..6]
RL20_SHEFN - 50S ribosomal protein L20 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplT PE=3 SV=1	165.0	[0..13]	[124..6]
RL20_RHIL3 - 50S ribosomal protein L20 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplT PE=3 SV=1	165.0	[0..13]	[138..6]
RL20_SHESA - 50S ribosomal protein L20 OS=Shewanella sp. (strain ANA-3) GN=rplT PE=3 SV=1 RL20_SHEB2 - 50S ribosomal protein L20 OS=Shewanella baltica (strain OS223) GN=rplT PE=3 SV=1 RL20_SHEON - 50S ribosomal protein L20 OS=Shewanella oneidensis (strain MR-1) GN=rplT PE=3 SV=1 RL20_SHEB9 - 50S ribosomal protein L20 OS=Shewanella baltica (strain OS195) GN=rplT PE=3 SV=1 RL20_SHESR - 50S ribosomal protein L20 OS=Shewanella sp. (strain MR-7) GN=rplT PE=3 SV=1 RL20_SHEB8 - 50S ribosomal protein L20 OS=Shewanella baltica (strain OS185) GN=rplT PE=3 SV=1 RL20_SHESM - 50S ribosomal protein L20 OS=Shewanella sp. (strain MR-4) GN=rplT PE=3 SV=1 SO2302 - ribosomal protein L20 RL20_SHEB5 - 50S ribosomal protein L20 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplT PE=3 SV=1 RL20_SHEPC - 50S ribosomal protein L20 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplT PE=3 SV=1 RL20_SHESW - 50S ribosomal protein L20 OS=Shewanella sp. (strain W3-18-1) GN=rplT PE=3 SV=1 RL20_SHEDO - 50S ribosomal protein L20 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=...	165.0	[0..13]	[124..6]
RL20_NITMU - 50S ribosomal protein L20 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplT PE=3...	165.0	[0..13]	[125..6]
RL20_BRUA1 - 50S ribosomal protein L20 OS=Brucella abortus (strain S19) GN=rplT PE=3 SV=1 RL20_BRUAB - 50S ribosomal protein L20 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplT PE=3 SV=1 RL20_BRUAB - 50S ribosomal protein L20 OS=Brucella abortus GN=rplT PE=3 SV=1 RL20_BRUME - 50S ribosomal protein L20 OS=Brucella melitensis GN=rplT PE=3 SV=1 RL20_BRUSU - 50S ribosomal protein L20 OS=Brucella suis GN=rplT PE=3 SV=1 RL20_BRUSU - 50S ribosomal protein L20 OS=Brucella suis biovar 1 (strain 1330) GN=rplT PE=3 SV=1 RL20_BRUME - 50S ribosomal protein L20 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... RL20_BRUMB - 50S ribosomal protein L20 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplT PE=3 SV=1 gi\|225626493, gi... - gi\|225626493\|ref\|ZP_03784532.1\| ribosomal protein L20 [Brucella ceti str. Cudo], gi\|225618150\|gb\|EEH... gi\|254690255 - gi\|254690255\|ref\|ZP_05153509.1\| 50S ribosomal protein L20 [Brucella abortus bv. 6 str. 870] gi\|237816465, gi... - gi\|237816465\|ref\|ZP_04595458.1\| ribosomal protein L20 [Brucella abortus str. 2308 A], gi\|237788532\|g... gi\|254696371 - gi\|254696371\|ref\|ZP_05158199.1\| 50S ribosomal protein L20 [Brucella abortus bv. 2 str. 86/8/59] gi\|254694742 - gi\|254694742\|ref\|ZP_05156570.1\| 50S ribosomal protein L20 [Brucella abortus bv. 3 str. Tulya] gi\|254705124 - gi\|254705124\|ref\|ZP_05166952.1\| 50S ribosomal protein L20 [Brucella suis bv. 3 str. 686] gi\|254700752 - gi\|254700752\|ref\|ZP_05162580.1\| 50S ribosomal protein L20 [Brucella suis bv. 5 str. 513] gi\|254709097 - gi\|254709097\|ref\|ZP_05170908.1\| 50S ribosomal protein L20 [Brucella pinnipedialis B2/94] RL20_BRUA2 - 50S ribosomal protein L20 OS=Brucella abortus (strain 2308) GN=rplT PE=3 SV=1 gi\|254707360 - gi\|254707360\|ref\|ZP_05169188.1\| 50S ribosomal protein L20 [Brucella pinnipedialis M163/99/10] gi\|254716167 - gi\|254716167\|ref\|ZP_05177978.1\| 50S ribosomal protein L20 [Brucella ceti M13/05/1] gi\|254713477 - gi\|254713477\|ref\|ZP_05175288.1\| 50S ribosomal protein L20 [Brucella ceti M644/93/1] RL20_BRUO2 - 50S ribosomal protein L20 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplT PE=3 SV... gi\|254731285 - gi\|254731285\|ref\|ZP_05189863.1\| 50S ribosomal protein L20 [Brucella abortus bv. 4 str. 292] RL20_BRUSI - 50S ribosomal protein L20 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplT PE=3 SV=1 gi\|254718163 - gi\|254718163\|ref\|ZP_05179974.1\| 50S ribosomal protein L20 [Brucella sp. 83/13] RL20_BRUC2 - 50S ribosomal protein L20 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplT PE=3 SV=1	165.0	[0..13]	[138..6]
RL20_PSEA6 - 50S ribosomal protein L20 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=rplT PE=3 S...	165.0	[0..13]	[125..6]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFLNLPLLV RSRGPDEFWR KRRIFKLAAH YRSRTRNVYS FAIRSVHRAL AYATKGRKLK  60
   61 KLDMAQLWST RVEAGCQQYG VGLETFKEGL ARSDILLNKK VLSDLAIWEP RSFEALVKIS 120
  121 RERAAVEGMP DIKRRSAFNQ VYGLSNLKLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	1vs6Q
Description:	No description for 1vs6Q was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.97474791978241	bayes_pls_golite062009
structural molecule activity	9.40020164128852	bayes_pls_golite062009
binding	1.3135072239079	bayes_pls_golite062009
nucleic acid binding	0.596788977988878	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: